# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 1.08e-19 a.132.1.3 122833 2rd3A 223 1.19e-19 3mvuA 226 1.31e-19 3ddeA 239 1.52e-19 3ibxA 221 1.57e-19 2qcxA 263 1.71e-19 1z72A 225 2.92e-19 a.132.1.3 124583 1uddA 226 6.40e-19 a.132.1.3 107776 3hlxA 258 7.14e-19 1rcwA 231 1.50e-18 a.132.1.4 97299 1otvA 259 1.55e-18 a.132.1.4 93526 1tyhA 248 2.22e-18 a.132.1.3 107458 2a2mA 258 3.38e-18 a.132.1.3 126039 3hmlA 258 4.13e-18 2q4xA 221 4.28e-18 a.132.1.3 139880 3hnhA 258 7.45e-18 2f2gA 221 8.22e-18 a.132.1.3 132816 2qzcA 214 1.20e-17 1rtwA 220 1.56e-17 a.132.1.3 97823 3bjdA 332 4.08e-14 1wwmA 190 1.74e-13 a.132.1.3 121363 3b5oA 244 4.99e-10 1wzdA 215 2.82e-08 a.132.1.1 121493 3i9tA 263 2.49e-07 1xjzA 233 2.76e-07 a.132.1.1 122049 1iw0A 215 8.28e-06 a.132.1.1 83720 1n45A 233 1.03e-05 a.132.1.1 79981 1wovA 250 0.003140 a.132.1.1 121124 1sk7A 198 0.003280 a.132.1.2 105671 1j77A 209 0.004868 a.132.1.2 62674 2jcdA 345 0.08376 1otkA 249 0.3219 a.25.1.2 93521 1kgnA 329 0.7298 a.25.1.2 68584 3ez0A 225 1.189 2inpC 328 1.942 1syyA 346 2.012 a.25.1.2 106126 1r2fA 319 2.232 a.25.1.2 16800 1xsm 390 2.560 1t0qB 330 3.310 a.25.1.2 106221 2incB 322 3.442 a.25.1.2 137525 1mtyB 384 3.950 a.25.1.2 16740 1w68A 390 3.969 a.25.1.2 109216 2rccA 346 4.034 3chhA 336 4.112 3ge3A 500 5.277 2itbA 206 6.103 a.25.1.7 147793 3f4tA 226 6.201 1bedA 181 6.453 c.47.1.13 90330 1fvkA 189 9.114 c.47.1.13 90351 1cliA 345 10.85 d.79.4.1,d.139.1.1 39816,41459 2gekA 406 11.28 1iirA 415 11.30 c.87.1.5 62453 3dhzA 329 13.20 a.25.1.2 157741 3f4rA 226 13.38 3dhiB 327 14.83 2incA 491 15.83 a.25.1.2 137524 2sasA 185 16.95 a.39.1.5 17258 2fzfA 175 17.10 a.25.1.1 134437 3ge3B 327 17.40 2in3A 216 19.72 2j2fA 363 20.94 3ee4A 323 21.58 1acvA 189 23.44 c.47.1.13 90328 3c48A 438 24.30 1mhyB 395 26.57 a.25.1.2 16781 1u3aA 189 28.00 c.47.1.13 119504 3f4sA 226 28.74 1r5jA 337 29.49 c.77.1.5 97097 2oc5A 244 29.68 a.25.1.6 148720 3kzqA 208 31.18 2wm1A 336 31.99 1r4wA 226 33.55 c.47.1.13 97050 3dthA 372 35.88 1jk0B 345 36.30 a.25.1.2 63143 1peaA 385 36.54 c.93.1.1 35662 2oh3A 167 41.45 a.25.1.8 148774 3cklA 298 45.07 1hw6A 278 45.10 c.1.7.1 61296 1q20A 299 46.18 c.37.1.5 95616 3l9sA 191 46.43 2remA 193 47.05 1p9eA 331 48.33 d.157.1.5 104088 3h7eA 237 49.02 1gw5A 621 49.53 a.118.1.10 70629 3h2zA 382 51.56 3lgbA 194 54.62 1vi0A 206 54.88 a.4.1.9,a.121.1.1 100720,100721 2v9yA 334 54.95 3gykA 175 55.38 3d0oA 317 56.57 1ls6A 295 57.41 c.37.1.5 91115 2ekdA 207 57.61 3fz5A 202 58.45 3hd5A 195 59.21 3lqsA 280 62.24 2z6vA 414 64.62 1vchA 175 64.82 c.61.1.1 119980 1t0qA 498 66.70 a.25.1.2 106220 2zcoA 293 67.17 2d5rB 116 72.47 d.370.1.1 146467 2bfwA 200 78.26 c.87.1.8 128456 1ztcA 221 79.83 d.157.1.11 125635 2vsnA 568 80.28 1bjwA 382 80.67 c.67.1.1 34349 2h4vA 320 81.16 1yzxA 226 84.90 2o2cA 613 85.60 2iw1A 374 85.68 c.87.1.8 137738 2cxnA 557 86.58 2regA 298 86.62 2ivxA 257 87.43 a.74.1.1,a.74.1.1 147813,147814 1txdA 385 89.03 a.87.1.1,b.55.1.1 107422,107423 2acoA 173 89.06