# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 5.61e-19 a.132.1.3 122833 2qcxA 263 8.23e-19 3hlxA 258 9.56e-19 3ddeA 239 9.59e-19 1z72A 225 1.03e-18 a.132.1.3 124583 3ibxA 221 1.03e-18 2rd3A 223 1.16e-18 3mvuA 226 1.58e-18 1otvA 259 4.12e-18 a.132.1.4 93526 3hnhA 258 4.43e-18 1uddA 226 5.86e-18 a.132.1.3 107776 1rcwA 231 6.64e-18 a.132.1.4 97299 3hmlA 258 1.08e-17 2q4xA 221 1.23e-17 a.132.1.3 139880 2f2gA 221 1.31e-17 a.132.1.3 132816 2a2mA 258 1.67e-17 a.132.1.3 126039 1tyhA 248 2.00e-17 a.132.1.3 107458 2qzcA 214 2.26e-17 1rtwA 220 9.74e-17 a.132.1.3 97823 3bjdA 332 4.49e-14 1wwmA 190 2.09e-13 a.132.1.3 121363 3b5oA 244 1.45e-08 1wzdA 215 1.40e-07 a.132.1.1 121493 1xjzA 233 4.83e-07 a.132.1.1 122049 3i9tA 263 8.46e-07 1iw0A 215 2.20e-05 a.132.1.1 83720 1n45A 233 6.89e-05 a.132.1.1 79981 1wovA 250 0.001230 a.132.1.1 121124 1sk7A 198 0.005192 a.132.1.2 105671 1j77A 209 0.009710 a.132.1.2 62674 2jcdA 345 0.03508 2incA 491 0.1582 a.25.1.2 137524 3ge3A 500 0.1887 1t0qA 498 0.4708 a.25.1.2 106220 3chhA 336 1.115 1mhyD 521 1.609 a.25.1.2 16780 2incB 322 2.295 a.25.1.2 137525 3dhiB 327 2.506 3ge3B 327 3.082 1kgnA 329 3.213 a.25.1.2 68584 1otkA 249 3.478 a.25.1.2 93521 1t0qB 330 3.495 a.25.1.2 106221 2inpA 494 3.675 2inpC 328 3.739 1xsm 390 5.275 3ez0A 225 5.388 1r2fA 319 5.868 a.25.1.2 16800 2j2fA 363 7.344 3dhiA 500 7.909 3f4tA 226 8.041 1mtyB 384 8.485 a.25.1.2 16740 3dhzA 329 9.383 a.25.1.2 157741 1mtyD 512 9.636 a.25.1.2 16742 1syyA 346 12.70 a.25.1.2 106126 1w68A 390 15.02 a.25.1.2 109216 2oh3A 167 16.53 a.25.1.8 148774 3f4sA 226 16.74 1iirA 415 17.32 c.87.1.5 62453 2rccA 346 20.98 2d5rB 116 21.08 d.370.1.1 146467 3bfxA 296 22.79 c.37.1.5 155239 1bedA 181 22.93 c.47.1.13 90330 1zc6A 305 23.09 c.55.1.5,c.55.1.5 124888,124889 2itbA 206 24.20 a.25.1.7 147793 1fvkA 189 25.05 c.47.1.13 90351 1r5jA 337 30.05 c.77.1.5 97097 3ee4A 323 31.05 1pa2A 306 32.87 a.93.1.1 18693 1wpaA 114 32.97 h.4.17.1 121145 2je8A 848 35.39 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1te2A 226 35.97 c.108.1.6 106792 1mhyB 395 36.23 a.25.1.2 16781 3ilcA 197 36.83 1qgjA 300 37.75 a.93.1.1 18691 3f4rA 226 42.36 3dthA 372 42.53 1acvA 189 42.82 c.47.1.13 90328 1xawA 140 42.90 h.4.17.1 121831 3kjrA 511 45.46 3dssB 331 51.27 a.102.4.3 157841 1lc5A 364 56.92 c.67.1.1 73827 1vicA 262 58.82 c.68.1.13 100756 2zcoA 293 60.90 2remA 193 61.92 1zklA 353 63.90 3deuA 166 64.01 a.4.5.28 157600 1mvwA 840 65.03 i.15.1.1 79523 1vchA 175 65.33 c.61.1.1 119980 2o2cA 613 65.48 3h7eA 237 67.25 2fzfA 175 69.36 a.25.1.1 134437 2ouwA 138 69.37 a.152.1.4 149029 1jz8A 1023 73.82 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1dceB 331 75.45 a.102.4.3 18872 2in3A 216 75.96 3cihA 739 77.12 2i53A 258 77.17 a.74.1.1,a.74.1.1 147505,147506 3ku2A 507 77.43 2b3yA 888 82.37 c.8.2.1,c.83.1.1 127803,127804 2o36A 674 83.79 1u7pA 164 83.97 c.108.1.17 113095 3lqsA 280 85.08 1ls6A 295 86.00 c.37.1.5 91115 1r9oA 477 87.76 a.104.1.1 104878