# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 5.24e-22 a.132.1.3 122833 2qcxA 263 8.23e-22 3hlxA 258 8.69e-22 2rd3A 223 8.75e-22 3ibxA 221 1.28e-21 1z72A 225 1.40e-21 a.132.1.3 124583 3ddeA 239 1.68e-21 3mvuA 226 3.04e-21 1otvA 259 1.04e-20 a.132.1.4 93526 2q4xA 221 1.20e-20 a.132.1.3 139880 3hnhA 258 1.22e-20 1rcwA 231 1.28e-20 a.132.1.4 97299 1tyhA 248 2.32e-20 a.132.1.3 107458 1uddA 226 2.66e-20 a.132.1.3 107776 2a2mA 258 2.78e-20 a.132.1.3 126039 3hmlA 258 3.17e-20 2f2gA 221 3.23e-20 a.132.1.3 132816 2qzcA 214 3.65e-20 1rtwA 220 1.76e-19 a.132.1.3 97823 3bjdA 332 3.46e-16 1wwmA 190 3.16e-15 a.132.1.3 121363 3b5oA 244 2.03e-09 1wzdA 215 4.70e-08 a.132.1.1 121493 1xjzA 233 9.47e-08 a.132.1.1 122049 3i9tA 263 1.43e-07 1iw0A 215 2.58e-05 a.132.1.1 83720 1n45A 233 5.91e-05 a.132.1.1 79981 1wovA 250 0.000773 a.132.1.1 121124 1j77A 209 0.007957 a.132.1.2 62674 1sk7A 198 0.009247 a.132.1.2 105671 2jcdA 345 0.03699 3chhA 336 0.3983 3ge3A 500 0.4019 1otkA 249 1.097 a.25.1.2 93521 2incA 491 1.208 a.25.1.2 137524 1t0qA 498 1.606 a.25.1.2 106220 2inpC 328 1.607 3dhiB 327 2.261 1mhyD 521 2.430 a.25.1.2 16780 1t0qB 330 2.717 a.25.1.2 106221 3ge3B 327 2.858 1kgnA 329 4.791 a.25.1.2 68584 2incB 322 4.955 a.25.1.2 137525 1r2fA 319 7.941 a.25.1.2 16800 1xsm 390 8.845 1iirA 415 8.879 c.87.1.5 62453 1xtoA 311 9.075 d.157.1.6 116030 3ez0A 225 12.29 1r5jA 337 12.38 c.77.1.5 97097 2j2fA 363 13.41 3f4tA 226 15.43 2oh3A 167 17.54 a.25.1.8 148774 2fzfA 175 17.62 a.25.1.1 134437 2d5rB 116 20.09 d.370.1.1 146467 1w68A 390 21.14 a.25.1.2 109216 3bfxA 296 23.59 c.37.1.5 155239 2itbA 206 23.89 a.25.1.7 147793 3dhzA 329 24.12 a.25.1.2 157741 2inpA 494 24.43 3f4sA 226 24.64 1mtyD 512 29.79 a.25.1.2 16742 1f5qB 252 31.16 a.74.1.1,a.74.1.1 18362,18363 1bedA 181 31.21 c.47.1.13 90330 3kjrA 511 34.83 2rccA 346 36.21 3cihA 739 36.42 3gmfA 205 37.18 1fvkA 189 41.32 c.47.1.13 90351 2gwhA 298 41.74 1w98B 283 47.46 a.74.1.1,a.74.1.1 144548,144549 1syyA 346 48.42 a.25.1.2 106126 2sasA 185 48.66 a.39.1.5 17258 2je8A 848 50.15 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1jz8A 1023 50.97 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1acvA 189 54.37 c.47.1.13 90328 3f4rA 226 57.31 2zcoA 293 60.23 2dvtA 327 65.36 c.1.9.15 131793 1qq5A 253 66.21 c.108.1.1 43327 1cliA 345 66.58 d.79.4.1,d.139.1.1 39816,41459 2wtbA 725 67.21 3deuA 166 67.84 a.4.5.28 157600 1s50A 259 68.80 c.94.1.1 118864 2af4C 333 69.11 c.77.1.5 126656 1mtyB 384 69.71 a.25.1.2 16740 1vchA 175 70.35 c.61.1.1 119980 1mvwA 840 70.82 i.15.1.1 79523 1zvdA 380 71.50 1vqrA 297 74.39 a.211.1.3 114015 2i53A 258 76.51 a.74.1.1,a.74.1.1 147505,147506 1vi0A 206 77.47 a.4.1.9,a.121.1.1 100720,100721 2remA 193 77.50 2wxfA 940 80.23 2igpA 120 81.38 3ku2A 507 81.38 3dthA 372 82.98 1z1bA 356 83.02 d.10.1.4,d.163.1.1 124346,124347 2wb9A 211 83.43 2qgsA 225 84.31 a.211.1.1 150782 3fm5A 150 85.53 3irsA 291 87.18 1wpaA 114 87.54 h.4.17.1 121145