# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 4.15e-22 a.132.1.3 122833 2rd3A 223 5.10e-22 2qcxA 263 5.67e-22 3ibxA 221 6.08e-22 3hlxA 258 7.14e-22 1z72A 225 7.82e-22 a.132.1.3 124583 3ddeA 239 1.20e-21 3mvuA 226 1.66e-21 1otvA 259 5.82e-21 a.132.1.4 93526 2q4xA 221 7.14e-21 a.132.1.3 139880 1rcwA 231 7.95e-21 a.132.1.4 97299 3hnhA 258 8.35e-21 2a2mA 258 1.26e-20 a.132.1.3 126039 1uddA 226 1.54e-20 a.132.1.3 107776 1tyhA 248 2.04e-20 a.132.1.3 107458 2f2gA 221 2.18e-20 a.132.1.3 132816 3hmlA 258 3.04e-20 2qzcA 214 3.42e-20 1rtwA 220 9.63e-20 a.132.1.3 97823 3bjdA 332 1.83e-16 1wwmA 190 2.14e-15 a.132.1.3 121363 3b5oA 244 5.43e-10 1wzdA 215 2.13e-08 a.132.1.1 121493 1xjzA 233 6.78e-08 a.132.1.1 122049 3i9tA 263 9.55e-08 1iw0A 215 1.21e-05 a.132.1.1 83720 1n45A 233 3.93e-05 a.132.1.1 79981 1wovA 250 0.000514 a.132.1.1 121124 1sk7A 198 0.006232 a.132.1.2 105671 1j77A 209 0.009089 a.132.1.2 62674 2jcdA 345 0.01781 3chhA 336 0.09177 3ge3A 500 0.1690 2incA 491 0.3174 a.25.1.2 137524 1t0qA 498 0.5339 a.25.1.2 106220 1mhyD 521 0.9281 a.25.1.2 16780 3ge3B 327 1.138 3dhiB 327 1.154 1t0qB 330 1.634 a.25.1.2 106221 2inpC 328 1.891 1otkA 249 2.062 a.25.1.2 93521 2incB 322 3.038 a.25.1.2 137525 1xsm 390 4.443 1kgnA 329 5.154 a.25.1.2 68584 1r2fA 319 5.578 a.25.1.2 16800 3f4tA 226 6.010 3ez0A 225 6.241 1iirA 415 7.797 c.87.1.5 62453 2j2fA 363 10.01 3f4sA 226 11.25 2d5rB 116 11.34 d.370.1.1 146467 2itbA 206 11.80 a.25.1.7 147793 1mtyD 512 11.94 a.25.1.2 16742 1r5jA 337 13.65 c.77.1.5 97097 2fzfA 175 13.94 a.25.1.1 134437 1mtyB 384 15.53 a.25.1.2 16740 1bedA 181 16.24 c.47.1.13 90330 2oh3A 167 16.78 a.25.1.8 148774 3dhzA 329 16.93 a.25.1.2 157741 1w68A 390 20.64 a.25.1.2 109216 3dhiA 500 21.46 2inpA 494 22.79 2je8A 848 24.11 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1zc6A 305 25.52 c.55.1.5,c.55.1.5 124888,124889 2rccA 346 26.12 1qq7A 253 28.67 c.108.1.1 43329 1fvkA 189 30.22 c.47.1.13 90351 3dthA 372 30.46 1f5qB 252 30.91 a.74.1.1,a.74.1.1 18362,18363 3f4rA 226 31.85 1xtoA 311 32.36 d.157.1.6 116030 1acvA 189 36.94 c.47.1.13 90328 3cihA 739 37.54 2zcoA 293 37.96 2sasA 185 38.57 a.39.1.5 17258 1s50A 259 38.73 c.94.1.1 118864 1mhyB 395 38.75 a.25.1.2 16781 3kjrA 511 39.21 3gmfA 205 42.51 1vchA 175 46.25 c.61.1.1 119980 2remA 193 47.06 2wtbA 725 48.02 1syyA 346 48.06 a.25.1.2 106126 2ct9A 208 49.97 2i53A 258 53.24 a.74.1.1,a.74.1.1 147505,147506 3deuA 166 53.47 a.4.5.28 157600 1pa2A 306 53.63 a.93.1.1 18693 1qgjA 300 54.69 a.93.1.1 18691 1ffyA 917 57.09 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1jz8A 1023 59.20 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2o2cA 613 59.39 1u7pA 164 60.69 c.108.1.17 113095 3bfxA 296 61.80 c.37.1.5 155239 3hy0A 441 63.40 2qgsA 225 64.04 a.211.1.1 150782 2wxfA 940 65.28 1cliA 345 66.08 d.79.4.1,d.139.1.1 39816,41459 1r9oA 477 67.20 a.104.1.1 104878 3lqsA 280 68.24 2in3A 216 68.92 1vi0A 206 69.00 a.4.1.9,a.121.1.1 100720,100721 1mxgA 435 71.66 b.71.1.1,c.1.8.1 85193,85194 2oauA 306 74.35 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1qq5A 253 74.43 c.108.1.1 43327 1lc5A 364 76.39 c.67.1.1 73827 2b3yA 888 79.92 c.8.2.1,c.83.1.1 127803,127804 1vqrA 297 80.56 a.211.1.3 114015 3fm5A 150 82.20 1wpaA 114 84.18 h.4.17.1 121145 3htzA 464 85.01 3ee4A 323 85.15 1smlA 269 85.40 d.157.1.1 42053 2cy8A 453 85.40 1r4wA 226 86.45 c.47.1.13 97050 1pb6A 212 87.45 a.4.1.9,a.121.1.1 88017,88018 2ouwA 138 88.85 a.152.1.4 149029