# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 4.11e-20 a.132.1.3 122833 2rd3A 223 6.62e-20 3hlxA 258 7.55e-20 2qcxA 263 8.20e-20 3ibxA 221 9.20e-20 1z72A 225 1.06e-19 a.132.1.3 124583 3ddeA 239 1.13e-19 3mvuA 226 1.91e-19 1otvA 259 6.51e-19 a.132.1.4 93526 1rcwA 231 7.06e-19 a.132.1.4 97299 3hnhA 258 9.36e-19 1uddA 226 1.10e-18 a.132.1.3 107776 2q4xA 221 1.14e-18 a.132.1.3 139880 2a2mA 258 1.64e-18 a.132.1.3 126039 1tyhA 248 1.69e-18 a.132.1.3 107458 3hmlA 258 2.12e-18 2qzcA 214 2.57e-18 2f2gA 221 2.62e-18 a.132.1.3 132816 1rtwA 220 9.04e-18 a.132.1.3 97823 3bjdA 332 5.32e-15 1wwmA 190 4.88e-14 a.132.1.3 121363 3b5oA 244 3.68e-09 1wzdA 215 1.01e-07 a.132.1.1 121493 1xjzA 233 3.33e-07 a.132.1.1 122049 3i9tA 263 3.99e-07 1iw0A 215 3.30e-05 a.132.1.1 83720 1n45A 233 8.16e-05 a.132.1.1 79981 1wovA 250 0.001082 a.132.1.1 121124 1sk7A 198 0.008717 a.132.1.2 105671 1j77A 209 0.02144 a.132.1.2 62674 2jcdA 345 0.06665 3chhA 336 0.3072 3ge3A 500 0.3472 2incA 491 0.4959 a.25.1.2 137524 1t0qA 498 0.8143 a.25.1.2 106220 1mhyD 521 1.753 a.25.1.2 16780 3dhiB 327 1.842 2inpC 328 2.005 3ge3B 327 2.169 2incB 322 2.267 a.25.1.2 137525 1t0qB 330 2.872 a.25.1.2 106221 1otkA 249 3.674 a.25.1.2 93521 1xsm 390 8.528 3ez0A 225 9.149 1kgnA 329 10.27 a.25.1.2 68584 1r2fA 319 10.81 a.25.1.2 16800 3f4tA 226 12.38 1iirA 415 12.67 c.87.1.5 62453 1r5jA 337 16.31 c.77.1.5 97097 3f4sA 226 18.09 2oh3A 167 18.34 a.25.1.8 148774 1mtyD 512 18.35 a.25.1.2 16742 2itbA 206 18.47 a.25.1.7 147793 1mtyB 384 18.84 a.25.1.2 16740 1w68A 390 21.11 a.25.1.2 109216 2d5rB 116 24.38 d.370.1.1 146467 2inpA 494 25.95 1bedA 181 27.92 c.47.1.13 90330 1fvkA 189 30.14 c.47.1.13 90351 3dhzA 329 33.24 a.25.1.2 157741 1zc6A 305 33.80 c.55.1.5,c.55.1.5 124888,124889 2fzfA 175 34.48 a.25.1.1 134437 3f4rA 226 35.95 2sasA 185 37.65 a.39.1.5 17258 2je8A 848 38.14 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1f5qB 252 40.98 a.74.1.1,a.74.1.1 18362,18363 3dhiA 500 43.17 3kjrA 511 45.60 3dthA 372 46.67 2zcoA 293 48.16 1acvA 189 49.52 c.47.1.13 90328 2remA 193 50.42 1mxgA 435 50.67 b.71.1.1,c.1.8.1 85193,85194 1s50A 259 53.01 c.94.1.1 118864 1xtoA 311 53.50 d.157.1.6 116030 2ct9A 208 53.56 3deuA 166 53.96 a.4.5.28 157600 2wtbA 725 54.18 1vqrA 297 56.55 a.211.1.3 114015 2in3A 216 57.51 2j2fA 363 59.02 1vi0A 206 60.29 a.4.1.9,a.121.1.1 100720,100721 3bfxA 296 60.74 c.37.1.5 155239 1vchA 175 64.36 c.61.1.1 119980 1u7pA 164 64.41 c.108.1.17 113095 1qgjA 300 67.09 a.93.1.1 18691 1lc5A 364 67.13 c.67.1.1 73827 2rccA 346 69.43 1qq5A 253 69.56 c.108.1.1 43327 1jz8A 1023 71.48 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1qq7A 253 71.69 c.108.1.1 43329 1cipA 353 73.65 a.66.1.1,c.37.1.8 18210,32093 2oauA 306 75.84 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1mvwA 840 75.89 i.15.1.1 79523 2b3yA 888 76.71 c.8.2.1,c.83.1.1 127803,127804 2o2cA 613 77.72 1cliA 345 78.60 d.79.4.1,d.139.1.1 39816,41459 3ee4A 323 82.45 3cihA 739 82.92 2i53A 258 83.78 a.74.1.1,a.74.1.1 147505,147506 1mhyB 395 84.14 a.25.1.2 16781 3fm5A 150 84.18 3dnfA 297 84.68 2af4C 333 84.69 c.77.1.5 126656 2dvtA 327 88.64 c.1.9.15 131793 1unlD 208 89.25 a.74.1.1 113326