# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yakA 263 1.20e-19 a.132.1.3 122833 2rd3A 223 1.61e-19 1z72A 225 1.90e-19 a.132.1.3 124583 2qcxA 263 2.37e-19 3ibxA 221 2.91e-19 3mvuA 226 3.22e-19 3ddeA 239 5.46e-19 3hlxA 258 5.59e-19 1uddA 226 1.13e-18 a.132.1.3 107776 2a2mA 258 1.75e-18 a.132.1.3 126039 1tyhA 248 2.97e-18 a.132.1.3 107458 2q4xA 221 3.16e-18 a.132.1.3 139880 1rcwA 231 3.17e-18 a.132.1.4 97299 3hnhA 258 4.30e-18 1otvA 259 4.57e-18 a.132.1.4 93526 2qzcA 214 5.08e-18 2f2gA 221 5.25e-18 a.132.1.3 132816 3hmlA 258 9.36e-18 1rtwA 220 2.73e-17 a.132.1.3 97823 3bjdA 332 5.66e-14 1wwmA 190 1.52e-12 a.132.1.3 121363 3b5oA 244 1.53e-09 3i9tA 263 3.66e-08 1wzdA 215 9.43e-08 a.132.1.1 121493 1xjzA 233 1.70e-07 a.132.1.1 122049 1n45A 233 8.16e-06 a.132.1.1 79981 1iw0A 215 1.71e-05 a.132.1.1 83720 1wovA 250 0.001063 a.132.1.1 121124 1j77A 209 0.003714 a.132.1.2 62674 1sk7A 198 0.01578 a.132.1.2 105671 2jcdA 345 0.06464 1otkA 249 0.1477 a.25.1.2 93521 2incB 322 0.6175 a.25.1.2 137525 1t0qB 330 0.7964 a.25.1.2 106221 2inpC 328 0.8543 1xsm 390 0.9890 3chhA 336 1.234 3ee4A 323 1.675 1kgnA 329 2.911 a.25.1.2 68584 1syyA 346 3.563 a.25.1.2 106126 1w68A 390 3.955 a.25.1.2 109216 1mtyB 384 4.958 a.25.1.2 16740 3ez0A 225 5.906 1mhyB 395 6.368 a.25.1.2 16781 1kwmA 402 7.069 c.56.5.1,d.58.3.1 73079,73080 2incA 491 9.246 a.25.1.2 137524 3dhzA 329 10.01 a.25.1.2 157741 2gekA 406 11.71 3beoA 375 11.72 2rccA 346 12.83 3c48A 438 14.54 3f4tA 226 15.00 3dhiB 327 19.36 1iirA 415 20.16 c.87.1.5 62453 1r2fA 319 20.62 a.25.1.2 16800 2itbA 206 21.66 a.25.1.7 147793 3g33B 306 22.38 2bfwA 200 22.74 c.87.1.8 128456 2bo9A 308 24.98 c.56.5.1 128897 2w96A 271 26.42 3hacA 728 27.07 1jqgA 433 27.68 c.56.5.1,d.58.3.1 71791,71792 1m4lA 307 29.65 c.56.5.1 78604 2sasA 185 31.31 a.39.1.5 17258 3ge3B 327 32.88 1jk0B 345 33.36 a.25.1.2 63143 1t0qA 498 34.01 a.25.1.2 106220 3ge3A 500 34.60 1peaA 385 35.44 c.93.1.1 35662 2w9zA 257 35.74 1c3jA 351 43.03 c.87.1.1 35459 3h2zA 382 45.08 3c8yA 574 45.79 c.96.1.1,d.15.4.2,d.58.1.5 156057,156058,156059 1xviA 275 45.93 c.108.1.10 116088 2d5rB 116 46.48 d.370.1.1 146467 1z5rA 306 48.32 c.56.5.1 124488 2z3zA 706 48.67 1jk0A 419 49.54 a.25.1.2 63142 2aexA 346 49.98 2j2fA 363 50.07 2q4uA 272 51.17 2iw1A 374 52.38 c.87.1.8 137738 3f4sA 226 52.73 7taa 478 53.09 3f4rA 226 53.71 1dtdA 303 54.22 c.56.5.1 33823 1mvwA 840 55.98 i.15.1.1 79523 3c4vA 426 58.82 1vi0A 206 59.48 a.4.1.9,a.121.1.1 100720,100721 1w98B 283 62.03 a.74.1.1,a.74.1.1 144548,144549 2in3A 216 62.17 1z2lA 423 63.48 c.56.5.4,d.58.19.1 124383,124384 1u3aA 189 65.18 c.47.1.13 119504 2gv8A 447 65.30 c.3.1.5,c.3.1.5 135759,135760 2regA 298 67.74 1bavA 309 68.99 c.56.5.1 33806 1eg2A 319 69.19 c.66.1.11 34249 1fvkA 189 72.46 c.47.1.13 90351 3fx6A 307 72.80 1cliA 345 73.50 d.79.4.1,d.139.1.1 39816,41459 1acvA 189 73.57 c.47.1.13 90328 2ctc 307 76.92 1iatA 557 79.63 c.80.1.2 62123 3fjuA 307 81.77 1o6gA 710 87.43 b.69.7.1,c.69.1.4 81087,81088 2f7bA 233 88.50 1f5qB 252 89.52 a.74.1.1,a.74.1.1 18362,18363