# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rd3A 223 6.21e-24 1yakA 263 7.02e-24 a.132.1.3 122833 3ibxA 221 1.04e-23 1z72A 225 1.19e-23 a.132.1.3 124583 2qcxA 263 1.59e-23 3ddeA 239 1.76e-23 3mvuA 226 2.57e-23 3hlxA 258 4.30e-23 1uddA 226 1.18e-22 a.132.1.3 107776 1rcwA 231 1.31e-22 a.132.1.4 97299 2q4xA 221 1.46e-22 a.132.1.3 139880 2a2mA 258 2.55e-22 a.132.1.3 126039 1tyhA 248 3.34e-22 a.132.1.3 107458 1otvA 259 3.92e-22 a.132.1.4 93526 2f2gA 221 5.12e-22 a.132.1.3 132816 3hnhA 258 5.34e-22 2qzcA 214 1.03e-21 1rtwA 220 2.59e-21 a.132.1.3 97823 3hmlA 258 3.41e-21 3bjdA 332 4.26e-17 1wwmA 190 6.73e-16 a.132.1.3 121363 3b5oA 244 5.22e-11 1wzdA 215 2.87e-09 a.132.1.1 121493 3i9tA 263 5.13e-09 1xjzA 233 9.58e-09 a.132.1.1 122049 1iw0A 215 1.43e-06 a.132.1.1 83720 1n45A 233 5.65e-06 a.132.1.1 79981 1wovA 250 0.000266 a.132.1.1 121124 1j77A 209 0.000491 a.132.1.2 62674 1sk7A 198 0.004160 a.132.1.2 105671 2jcdA 345 0.01729 1otkA 249 0.2453 a.25.1.2 93521 1kgnA 329 0.3222 a.25.1.2 68584 3chhA 336 0.3650 1r2fA 319 1.198 a.25.1.2 16800 1xsm 390 2.626 2incB 322 2.848 a.25.1.2 137525 2itbA 206 3.046 a.25.1.7 147793 3f4tA 226 3.552 1iirA 415 3.561 c.87.1.5 62453 2inpC 328 4.404 2oh3A 167 5.023 a.25.1.8 148774 1t0qB 330 5.806 a.25.1.2 106221 3dhzA 329 5.870 a.25.1.2 157741 1jk0B 345 6.323 a.25.1.2 63143 3ez0A 225 6.926 1fvkA 189 7.575 c.47.1.13 90351 2rccA 346 7.883 1bedA 181 8.350 c.47.1.13 90330 1w68A 390 8.736 a.25.1.2 109216 3h7eA 237 10.16 3hacA 728 12.50 1kwmA 402 13.00 c.56.5.1,d.58.3.1 73079,73080 2fzfA 175 13.30 a.25.1.1 134437 3f4rA 226 14.04 3dhiB 327 14.85 1gheA 177 15.45 d.108.1.1 76222 2w96A 271 15.54 3f4sA 226 15.75 1mtyB 384 16.78 a.25.1.2 16740 1acvA 189 17.57 c.47.1.13 90328 2qvsB 310 18.74 1m4lA 307 21.18 c.56.5.1 78604 1u3aA 189 22.05 c.47.1.13 119504 3h2zA 382 23.52 1syyA 346 23.52 a.25.1.2 106126 2qecA 204 26.52 2d5rB 116 26.54 d.370.1.1 146467 3g33B 306 26.88 3ge3B 327 27.47 1mvwA 840 29.40 i.15.1.1 79523 2bo9A 308 31.79 c.56.5.1 128897 2f94F 350 33.07 2ctc 307 33.33 2remA 193 42.26 1vi0A 206 42.52 a.4.1.9,a.121.1.1 100720,100721 2vccA 891 48.19 2sasA 185 49.05 a.39.1.5 17258 1r4wA 226 49.38 c.47.1.13 97050 1dtdA 303 49.39 c.56.5.1 33823 2qtqA 213 50.67 1peaA 385 52.58 c.93.1.1 35662 1zndA 174 53.97 b.60.1.1 125380 2b43A 526 55.06 1yzxA 226 57.83 3ee4A 323 58.17 2gekA 406 60.02 1f5qB 252 61.48 a.74.1.1,a.74.1.1 18362,18363 3bt5A 177 63.47 1o6gA 710 63.78 b.69.7.1,c.69.1.4 81087,81088 2j2fA 363 63.82 2in3A 216 65.28 3fx6A 307 65.45 2q4uA 272 66.47 1odmA 331 67.91 b.82.2.1 86875 2qf9A 179 71.67 2o2cA 613 76.19 2zcoA 293 78.33 1qq7A 253 80.67 c.108.1.1 43329 3gt5A 402 80.77 2wtbA 725 82.33 1vz0A 230 82.87 a.4.14.1,d.268.1.1 108929,108930 2nx4A 194 83.35 2wm1A 336 87.95 1mhyB 395 87.96 a.25.1.2 16781 2uz0A 263 88.10 2w9zA 257 88.23 1sxvA 172 88.77