# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hmlA 258 4.26e-14 1yakA 263 4.60e-14 a.132.1.3 122833 3ibxA 221 2.13e-13 2rd3A 223 2.16e-13 2qcxA 263 3.29e-13 3mvuA 226 3.69e-13 1z72A 225 4.16e-13 a.132.1.3 124583 1uddA 226 4.91e-13 a.132.1.3 107776 3hlxA 258 5.24e-13 3ddeA 239 8.28e-13 1otvA 259 1.29e-12 a.132.1.4 93526 1tyhA 248 1.62e-12 a.132.1.3 107458 2a2mA 258 2.00e-12 a.132.1.3 126039 3hnhA 258 3.79e-12 2qzcA 214 3.86e-12 1rcwA 231 1.18e-11 a.132.1.4 97299 1rtwA 220 7.91e-11 a.132.1.3 97823 2q4xA 221 1.15e-10 a.132.1.3 139880 2f2gA 221 4.21e-10 a.132.1.3 132816 1wwmA 190 8.93e-08 a.132.1.3 121363 3bjdA 332 1.04e-07 3b5oA 244 4.73e-06 1wzdA 215 0.000134 a.132.1.1 121493 1n45A 233 0.000689 a.132.1.1 79981 1xjzA 233 0.002880 a.132.1.1 122049 3i9tA 263 0.004217 1iw0A 215 0.006819 a.132.1.1 83720 1sk7A 198 0.1114 a.132.1.2 105671 1wovA 250 0.5454 a.132.1.1 121124 3n7qA 310 0.8875 1j77A 209 1.138 a.132.1.2 62674 1syyA 346 1.530 a.25.1.2 106126 3m66A 270 2.377 1r2fA 319 3.454 a.25.1.2 16800 2bbrA 195 4.367 2wk6A 482 4.446 1uouA 474 5.438 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1f6dA 376 5.671 c.87.1.3 35467 2j0fA 482 7.098 2b6cA 220 7.767 a.118.1.17 127983 2qg7A 458 8.088 1o6cA 388 8.132 c.87.1.3 92565 1kgnA 329 8.263 a.25.1.2 68584 3dhzA 329 9.260 a.25.1.2 157741 1v4vA 376 11.20 c.87.1.3 100313 2f1sA 186 13.31 2cycA 375 13.77 1sxjC 340 14.63 a.80.1.1,c.37.1.20 106085,106086 1ee5A 424 16.33 a.118.1.1 19132 3i6iA 346 16.76 3ij6A 312 17.53 2incA 491 18.89 a.25.1.2 137524 1eyeA 280 19.10 c.1.21.1 29672 1sxjB 323 19.90 a.80.1.1,c.37.1.20 106083,106084 3hx4A 508 20.63 1w32A 348 20.80 c.1.8.3 114120 2incB 322 23.10 a.25.1.2 137525 2remA 193 23.86 2f7lA 455 24.47 3beoA 375 24.94 3f4sA 226 25.12 1mtyD 512 25.31 a.25.1.2 16742 1i84S 1184 25.33 i.15.1.1 61940 3ip4B 483 25.45 3igxA 324 25.61 1wqaA 455 25.82 3kofA 337 25.86 1r4wA 226 26.83 c.47.1.13 97050 3hbeX 204 27.27 2o70A 174 27.61 a.288.1.1 148645 2inpC 328 27.65 1j5wA 298 27.70 d.104.1.1 71589 3f4tA 226 28.14 3gnlA 244 28.40 3csvA 333 30.62 3cnhA 200 30.99 1iqpA 327 31.63 a.80.1.1,c.37.1.20 62649,62650 1yqyA 523 31.66 d.92.1.14,d.166.1.1 123903,123904 1mpgA 282 31.88 a.96.1.3,d.129.1.2 18747,41296 2qezA 455 32.08 2gmyA 153 32.16 a.152.1.3 135398 1clxA 347 33.43 c.1.8.3 28899 2vebA 195 33.88 3kndA 460 34.01 3ljxA 288 34.24 3lvyA 207 34.29 1aj2 282 35.23 2v26A 784 35.68 1giqA 413 37.16 d.166.1.1,d.166.1.1 76224,76225 3ljvA 283 38.21 1zlqA 502 38.85 c.94.1.1 125253 2ekcA 262 39.57 3ciwA 348 40.31 1h5uA 842 41.07 c.87.1.4 60655 1zjcA 418 42.19 e.60.1.1 125147 2i1qA 322 42.20 a.60.4.1,c.37.1.11 136984,136985 3hjzA 334 43.96 2pgsA 451 44.34 2eiyA 308 44.71 3dhiA 500 45.48 1fvkA 189 46.63 c.47.1.13 90351 2c4mA 796 48.32 3cswA 285 48.92 3f4rA 226 50.48 1oyzA 280 50.99 a.118.1.16 93775 3dfgA 162 51.54 1yzyA 413 51.65 c.146.1.1 124292 3he0A 196 52.40 3chhA 336 52.44 1t0qB 330 53.71 a.25.1.2 106221 1rd5A 262 54.82 c.1.2.4 111772 2hdoA 209 55.04 c.108.1.6 136345 1bedA 181 55.08 c.47.1.13 90330 3kzqA 208 56.11 2depA 356 57.24 1vk2A 204 57.38 c.18.1.2 100845 1x19A 359 58.12 2hs5A 239 59.05 a.4.5.6,a.78.1.1 147379,147380 3draB 390 59.39 1t0qA 498 61.23 a.25.1.2 106220 3cwnA 337 61.56 3lc0A 456 61.74 2vglB 591 61.90 i.23.1.1 153035 1dceB 331 62.39 a.102.4.3 18872 3hrjA 439 62.69 1h3fA 432 62.78 c.26.1.1,d.66.1.4 76631,76632 3hmuA 472 63.11 3lcdA 329 63.73 1lrvA 244 64.38 a.118.1.5 19146 1ur3M 319 65.65 c.1.7.1 99806 1mhyD 521 66.37 a.25.1.2 16780 1u2kA 309 67.17 a.93.1.3 112983 3ktdA 341 67.40 2o71A 115 67.43 2c1mA 424 67.48 1r5jA 337 67.66 c.77.1.5 97097 3i05A 395 68.58 3lgbA 194 68.63 3lecA 230 70.12 2sqcA 631 70.87 a.102.4.2,a.102.4.2 18854,18855 3n3rA 748 71.47 1jq5A 370 72.29 e.22.1.2 67084 3iixA 348 72.62 1mxrA 375 73.44 a.25.1.2 85197 1xikA 375 74.35 a.25.1.2 16784 3cdlA 203 74.40 1vbuA 328 74.75 c.1.8.3 119963 2qcoA 210 74.86 2tpt 440 76.80 3gykA 175 76.94 1ad1A 266 77.10 c.1.21.1 29668 3l3qA 427 77.37 2bkhA 814 78.28 2ivxA 257 79.89 a.74.1.1,a.74.1.1 147813,147814 1jpaA 312 80.40 d.144.1.7 67011 2in3A 216 82.37 1iirA 415 82.68 c.87.1.5 62453 3f1bA 203 82.68 1mwvA 714 82.92 a.93.1.3,a.93.1.3 85161,85162 1fgkA 310 83.27 d.144.1.7 41693 2qulA 290 83.82 2r60A 499 84.11 2nuwA 288 84.56 2qacA 146 84.95 3hpxA 425 87.03 3goaA 387 87.12 3lqsA 280 87.39 2ogeA 399 87.41 1cfrA 285 88.13 c.52.1.7 33312 1wrvA 308 89.32 1cfr 285 89.49 2pbxA 203 90.00