# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rcwA 231 5.10e-31 a.132.1.4 97299 2qzcA 214 3.01e-24 3mvuA 226 2.98e-23 2rd3A 223 1.97e-20 3ibxA 221 3.01e-20 1uddA 226 7.63e-19 a.132.1.3 107776 1yakA 263 2.30e-18 a.132.1.3 122833 1tyhA 248 5.09e-18 a.132.1.3 107458 2qcxA 263 1.45e-17 1rtwA 220 2.12e-16 a.132.1.3 97823 3ddeA 239 6.14e-12 1z72A 225 1.46e-11 a.132.1.3 124583 2q4xA 221 2.46e-10 a.132.1.3 139880 2f2gA 221 5.84e-10 a.132.1.3 132816 3hlxA 258 1.70e-07 1otvA 259 1.69e-06 a.132.1.4 93526 3hnhA 258 3.52e-06 3hmlA 258 9.50e-06 1xjzA 233 7.62e-04 a.132.1.1 122049 1n45A 233 8.81e-04 a.132.1.1 79981 3i9tA 263 1.47e-03 2a2mA 258 1.59e-03 a.132.1.3 126039 3b5oA 244 1.94e-02 3bjdA 332 3.23e-02 1syyA 346 3.61e-02 a.25.1.2 106126 1wwmA 190 1.02e-01 a.132.1.3 121363 1j77A 209 1.23e-01 1j77A a.132.1.2 62674 1w68A 390 1.68e-01 a.25.1.2 109216 1wzdA 215 1.85e-01 a.132.1.1 121493 1xsm 390 2.77e-01 1xsm 2iyaA 424 2.95e-01 1iw0A 215 3.75e-01 a.132.1.1 83720 1vlgA 176 1.00e+00 a.25.1.1 108816 2ou3A 161 2.26e+00 a.287.1.1 149018 3f2vA 192 2.82e+00 2occE 109 3.26e+00 2occE a.118.11.1 19224 1wtyA 119 3.58e+00 a.24.16.2 114880 1s3qA 173 3.69e+00 a.25.1.1 118848 2vebA 195 3.78e+00 3ia7A 402 4.17e+00 1v54E 109 5.69e+00 a.118.11.1 100326 3ag3E 109 5.83e+00 1ylkA 172 9.29e+00 1ed1A 135 9.61e+00 1hiwA a.61.1.1 18130 1a31A 538 9.68e+00 1a36A d.163.1.2,e.15.1.1 42170,43263 1a8y 367 1.01e+01 1a8y 1a8yA 367 1.01e+01 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2a1vA 144 1.06e+01 d.198.3.1 126019 2qv2A 342 1.16e+01 3gycA 393 1.17e+01 2avxA 171 1.19e+01 3c48A 438 1.25e+01 1z0xA 220 1.25e+01 a.4.1.9,a.121.1.1 124334,124335 3bvfA 181 1.25e+01 2zuyA 620 1.29e+01 1ej9A 563 1.32e+01 1a36A d.163.1.2,e.15.1.1 42172,43265 2pq6A 482 1.34e+01 c.87.1.10 149785 2zcxA 231 1.36e+01 2dm6A 333 1.46e+01 b.35.1.2,c.2.1.1 131567,131568 3li9A 291 1.56e+01 2vliA 183 1.68e+01 1r49A 592 1.83e+01 a.2.8.1,d.163.1.2,e.15.1.1 96983,96984,96985 1tqhA 247 1.95e+01 c.69.1.29 107225 2fm8A 135 1.99e+01 d.198.1.1 133767 1m5sA 297 2.15e+01 d.58.33.1,d.58.33.1 74511,74512 2ev1A 222 2.15e+01 2oc5A 244 2.26e+01 a.25.1.6 148720 1wwpA 119 2.31e+01 2vy0A 264 2.40e+01 1io2A 213 2.64e+01 1ekeA c.55.3.1 62612 1r1dA 247 2.66e+01 c.69.1.29 96813 1e7lA 157 2.70e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1vr7A 142 2.71e+01 d.156.1.2 120443 1b65A 375 2.75e+01 1b65A d.154.1.1 42020 2vdwB 287 2.81e+01 1a34A 159 3.00e+01 1a34A b.121.7.1 23286 3c4vA 426 3.04e+01 3hq2A 501 3.06e+01 1g8iA 190 3.21e+01 1rec a.39.1.5 60363 3h52A 254 3.25e+01 1tluA 130 3.30e+01 d.156.1.2 107139 1g7dA 106 3.36e+01 1g7dA a.71.1.1 18318 1oaoC 729 3.43e+01 e.26.1.3 86746 1omrA 201 3.49e+01 a.39.1.5 93349 3i04M 728 3.51e+01 3cneA 175 3.54e+01 1rrjA 565 3.64e+01 a.2.8.1,d.163.1.2,e.15.1.1 105078,105079,105080 2a19B 284 3.68e+01 1lpqA 564 3.71e+01 a.2.8.1,d.163.1.2,e.15.1.1 74174,74175,74176 1a3yA 149 3.73e+01 1obpA b.60.1.1 27110 1en7A 157 3.82e+01 1en7A a.140.4.1,d.4.1.5 64733,64734 1abbA 828 3.85e+01 1a8i c.87.1.4 35536 2g3vA 208 3.86e+01 2z37A 244 3.91e+01 3iam3 783 4.02e+01 2clbA 188 4.16e+01 1ile 821 4.21e+01 1ile 3c9fA 557 4.23e+01 d.114.1.1,d.159.1.2 156125,156126 1mjgM 729 4.23e+01 e.26.1.3 79204 3l05A 359 4.24e+01 3ha2A 177 4.26e+01 1k4tA 592 4.27e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1z5vA 474 4.29e+01 2wiyA 394 4.40e+01 1zq6A 359 4.66e+01 2j016 54 4.73e+01 3ebrA 159 4.74e+01 3kznA 359 4.80e+01 1a36A 592 4.83e+01 1a36A a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 3l02A 359 4.99e+01 1seuA 592 5.03e+01 a.2.8.1,d.163.1.2,e.15.1.1 118952,118953,118954 3n6xA 474 5.05e+01 1r12A 258 5.06e+01 c.23.14.3 96780 2b0cA 206 5.11e+01 c.108.1.2 127633 1kn0A 212 5.19e+01 d.50.1.3 77444 3b7hA 78 5.25e+01 3d3aA 612 5.29e+01 1rxyA 253 5.42e+01 c.56.2.1 98065 3l04A 359 5.54e+01 1hf8A 289 5.59e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 2pyyA 228 5.59e+01 1h2iA 209 5.59e+01 d.50.1.3 76550 1e5rA 290 5.62e+01 1e5rA b.82.2.4 59276 3emrA 310 5.72e+01 1khdA 345 5.76e+01 a.46.2.1,c.27.1.1 77400,77401 2hrdA 253 5.87e+01 3hx4A 508 5.89e+01 3d59A 383 5.95e+01 2cztA 167 5.97e+01 2juaA 102 6.00e+01 k.8.1.1 148212 2glfA 450 6.06e+01 1umnA 165 6.15e+01 a.25.1.1 99607 1hg5A 289 6.20e+01 1hg5A a.7.8.2,a.118.9.3 90360,90361 3loiA 172 6.41e+01 2obaA 138 6.43e+01 3f3fC 570 6.45e+01 2pcqA 283 6.48e+01 2ic8A 182 6.53e+01 f.51.1.1 137235 1w2yA 229 6.55e+01 a.204.1.1 109140 2elcA 329 6.60e+01 a.46.2.1,c.27.1.1 146897,146898 2q28A 564 6.62e+01 1vgoA 253 6.72e+01 2csbA 519 6.76e+01 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1dzkA 157 6.77e+01 1obpA b.60.1.1 27096 1a35A 538 6.83e+01 1a36A d.163.1.2,e.15.1.1 42171,43264 2okjA 504 6.90e+01 1p68A 102 6.91e+01 k.8.1.1 94158 2rb9A 334 6.96e+01 2cx6A 90 6.97e+01 c.9.1.1 130981 1k3pA 426 6.97e+01 a.103.1.1 77237 2i8aA 252 7.00e+01 1owcA 427 7.00e+01 a.103.1.1 104039 1nigA 152 7.04e+01 a.25.2.1 85740 1w36C 1122 7.05e+01 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2p6vA 114 7.07e+01 a.277.1.1 149278 1ayrA 368 7.10e+01 1cf1A b.1.18.11,b.1.18.11 21915,21916 2nq2A 337 7.28e+01 3e5nA 386 7.49e+01 1foeA 377 7.53e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1cf1A 404 7.69e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 1ichA 112 7.73e+01 a.77.1.2 71182 3gr7A 340 7.78e+01 2x9rY 351 7.81e+01 2hw6A 307 7.86e+01