# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qcxA 263 7.06e-22 1yakA 263 1.14e-21 a.132.1.3 122833 1tyhA 248 1.86e-21 a.132.1.3 107458 2rd3A 223 1.97e-21 3ibxA 221 2.76e-21 3mvuA 226 8.03e-21 1uddA 226 1.81e-19 a.132.1.3 107776 3hlxA 258 3.79e-19 1otvA 259 1.36e-18 a.132.1.4 93526 3hmlA 258 4.30e-18 1rtwA 220 6.66e-18 a.132.1.3 97823 3hnhA 258 1.83e-17 1rcwA 231 3.35e-17 a.132.1.4 97299 1z72A 225 3.76e-17 a.132.1.3 124583 3ddeA 239 2.36e-16 2qzcA 214 1.75e-15 2f2gA 221 6.44e-15 a.132.1.3 132816 2q4xA 221 7.55e-15 a.132.1.3 139880 2a2mA 258 2.01e-11 a.132.1.3 126039 3bjdA 332 3.75e-11 3b5oA 244 1.96e-07 1xjzA 233 3.26e-07 a.132.1.1 122049 1n45A 233 3.84e-07 a.132.1.1 79981 3i9tA 263 4.76e-07 1wzdA 215 6.60e-07 a.132.1.1 121493 1iw0A 215 1.06e-06 a.132.1.1 83720 1syyA 346 4.41e-06 a.25.1.2 106126 1wwmA 190 6.91e-04 a.132.1.3 121363 1wovA 250 7.53e-04 a.132.1.1 121124 1j77A 209 4.07e-03 1j77A a.132.1.2 62674 2iyaA 424 2.24e-01 3ez0A 225 3.07e-01 1w68A 390 4.56e-01 a.25.1.2 109216 1xsm 390 4.70e-01 1xsm 2itbA 206 1.22e+00 a.25.1.7 147793 2uw1A 338 1.36e+00 3c4vA 426 1.41e+00 3ee4A 323 1.48e+00 2i53A 258 1.73e+00 a.74.1.1,a.74.1.1 147505,147506 1qfmA 710 2.15e+00 1qfmA b.69.7.1,c.69.1.4 27673,34641 1aszB 490 2.18e+00 1b8aA b.40.4.1,d.104.1.1 25241,40762 3e0dA 1220 2.31e+00 1c7sA 858 2.49e+00 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1xqoA 256 2.51e+00 a.96.1.6 115853 1h2wA 710 2.71e+00 b.69.7.1,c.69.1.4 76596,76597 3c48A 438 2.77e+00 1eovA 487 3.05e+00 1b8aA b.40.4.1,d.104.1.1 25239,40760 2w96A 271 3.06e+00 2a2cA 478 3.10e+00 3hy0A 441 3.24e+00 1o6gA 710 3.31e+00 b.69.7.1,c.69.1.4 81087,81088 2b3yA 888 3.61e+00 c.8.2.1,c.83.1.1 127803,127804 3ia7A 402 3.67e+00 2gwdA 449 4.19e+00 1rt8A 513 4.33e+00 a.40.1.1 105095 1fiqC 763 4.46e+00 1fiqC d.41.1.1,d.133.1.1 38588,41418 1nw3A 416 4.50e+00 c.66.1.31 86288 2oc5A 244 4.96e+00 a.25.1.6 148720 2e8gA 241 4.96e+00 1kz7A 353 5.64e+00 a.87.1.1,b.55.1.1 73333,73334 2ar0A 541 5.93e+00 c.66.1.45 127185 3etrC 755 6.88e+00 1wakA 397 7.05e+00 1z45A 699 7.28e+00 b.30.5.4,c.2.1.2 124427,124428 3chhA 336 7.45e+00 1obrA 326 7.58e+00 c.56.5.2 33828 3b9jC 763 7.71e+00 d.41.1.1,d.133.1.1 155004,155005 1vk2A 204 7.75e+00 c.18.1.2 100845 3mesA 424 8.74e+00 3gl5A 239 8.86e+00 2ic8A 182 8.88e+00 f.51.1.1 137235 3b44A 180 8.89e+00 1vljA 407 8.98e+00 e.22.1.2 108832 2w9zA 257 9.01e+00 3c5iA 369 9.18e+00 3g0tA 437 9.89e+00 1sk7A 198 1.05e+01 a.132.1.2 105671 2fozA 347 1.06e+01 2e4tA 519 1.09e+01 3inhA 415 1.13e+01 3i3lA 591 1.14e+01 2iqgA 406 1.25e+01 b.50.1.2 137588 2q9oA 559 1.28e+01 b.6.1.3,b.6.1.3,b.6.1.3 150149,150150,150151 1bn7A 294 1.30e+01 1bn6A c.69.1.8 34677 2w3cA 577 1.32e+01 3gr7A 340 1.34e+01 2r60A 499 1.36e+01 2vatA 444 1.38e+01 c.69.1.40 152831 3g9xA 299 1.39e+01 2on5A 206 1.42e+01 1aoa 275 1.46e+01 1aoa 2jcdA 345 1.50e+01 3clwA 507 1.53e+01 2ih8A 559 1.53e+01 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2vavA 444 1.54e+01 c.69.1.40 152844 3fbwA 299 1.58e+01 1c3pA 375 1.62e+01 1c3pA c.42.1.2 32606 1lfkA 398 1.65e+01 a.104.1.1 77926 3fwhA 299 1.67e+01 2f9iB 285 1.69e+01 3a8rA 179 1.69e+01 1r53A 382 1.74e+01 d.258.1.1 97063 1n4qB 377 1.75e+01 a.102.4.3 91636 2gv8A 447 1.78e+01 c.3.1.5,c.3.1.5 135759,135760 2i62A 265 1.82e+01 1v97A 1332 1.84e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2xdqA 460 1.86e+01 3dkhA 559 1.87e+01 3mqdA 428 1.87e+01 3lrfA 428 1.89e+01 2pjzA 263 1.89e+01 1j0hA 588 1.91e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1vqwA 457 1.95e+01 c.3.1.5,c.3.1.5 114028,114029 3k1aA 491 1.96e+01 3ii1A 535 1.96e+01 3hrpA 409 1.99e+01 1y56B 382 2.06e+01 1j8mF 297 2.07e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1otkA 249 2.07e+01 a.25.1.2 93521 1rh5A 436 2.07e+01 f.41.1.1 97464 3l8bA 906 2.09e+01 1kwmA 402 2.10e+01 c.56.5.1,d.58.3.1 73079,73080 3ecmA 338 2.11e+01 1m1nA 491 2.11e+01 c.92.2.3 78417 2zuyA 620 2.13e+01 2vn4A 599 2.16e+01 2v9dA 343 2.20e+01 1umpA 631 2.24e+01 a.102.4.2,a.102.4.2 99619,99620 1t5jA 313 2.24e+01 a.209.1.1 99125 3m1iC 1049 2.27e+01 1hl2A 297 2.36e+01 c.1.10.1 83581 1a6dB 543 2.51e+01 1a6dA a.129.1.2,c.8.5.2,d.56.1.2 19489,30820,38937 3msuA 427 2.52e+01 1ig9A 903 2.65e+01 1clqA c.55.3.5,e.8.1.1 62367,62368 1oacA 727 2.65e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3fw6A 534 2.70e+01 1wymA 155 2.70e+01 2wafA 682 2.74e+01 2vebA 195 2.74e+01 2c1cA 312 2.80e+01 c.56.5.1 129630 3hq2A 501 2.87e+01 2qqyA 149 2.88e+01 1kczA 413 2.91e+01 c.1.11.2,d.54.1.1 68451,68452 2ev1A 222 2.94e+01 3lzjA 903 3.06e+01 3hl1A 317 3.06e+01 1cv2A 296 3.13e+01 1bn6A c.69.1.8 34680 3lmsA 309 3.17e+01 3m4pA 456 3.19e+01 2sqcA 631 3.21e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 2q8nA 460 3.32e+01 3kzqA 208 3.34e+01 2nr9A 196 3.39e+01 f.51.1.1 138519 1cliA 345 3.40e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2b76A 602 3.44e+01 a.7.3.1,c.3.1.4,d.168.1.1 128009,128010,128011 2hsaA 402 3.46e+01 1aisB 200 3.47e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1vlbA 907 3.51e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2qg7A 458 3.56e+01 1ea9C 583 3.57e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2wkjA 303 3.61e+01 3e4aA 1019 3.65e+01 1z5rA 306 3.68e+01 c.56.5.1 124488 2p5zX 491 3.68e+01 b.40.8.1,b.106.1.1,b.106.1.1 149263,149264,149265 1jnrA 643 3.82e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1csh 435 3.88e+01 1csh 1cshA 435 3.88e+01 a.103.1.1 18880 1ouvA 273 3.88e+01 a.118.18.1 93570 2vunA 386 3.90e+01 2ebdA 309 3.97e+01 2j0nA 200 4.00e+01 a.250.1.1 137899 1mxgA 435 4.00e+01 b.71.1.1,c.1.8.1 85193,85194 1rlzA 369 4.03e+01 c.31.1.1 104989 1t2bA 397 4.04e+01 3fegA 379 4.04e+01 2okcA 445 4.07e+01 c.66.1.45 148801 1qxoA 388 4.09e+01 d.258.1.1 96539 1vhnA 318 4.10e+01 c.1.4.1 100693 3hgoA 402 4.22e+01 3lu2A 311 4.27e+01 2fkzA 155 4.30e+01 a.25.1.1 133688 3l4gB 589 4.32e+01 3ebrA 159 4.34e+01 1s48A 609 4.35e+01 e.8.1.4 98475 1mj5A 302 4.36e+01 c.69.1.8 91285 3bb7A 321 4.39e+01 2fxuA 375 4.40e+01 c.55.1.1,c.55.1.1 134340,134341 1bw0A 416 4.41e+01 1bw0A c.67.1.1 34385 2ax3A 502 4.49e+01 c.72.1.4,c.104.1.1 127477,127478 1yoeA 322 4.61e+01 2gtrA 261 4.62e+01 2ckiA 262 4.63e+01 3fayA 387 4.65e+01 1mtyB 384 4.66e+01 1mtyB a.25.1.2 16740 1j8yF 297 4.70e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1sviA 195 4.73e+01 c.37.1.8 106048 1abbA 828 4.74e+01 1a8i c.87.1.4 35536 2fjbA 643 4.74e+01 3m5uA 361 4.81e+01 1jqgA 433 4.82e+01 c.56.5.1,d.58.3.1 71791,71792 1pzgA 331 4.96e+01 c.2.1.5,d.162.1.1 95425,95426 1auvA 311 4.97e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1iq0A 592 4.99e+01 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 1vgmA 378 5.01e+01 2h12A 436 5.03e+01 3h8lA 409 5.06e+01 3hc6A 232 5.11e+01 1ryt 190 5.12e+01 1ryt 1elvA 333 5.12e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1vl1A 232 5.13e+01 c.124.1.1 108707 1afwA 393 5.16e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 3ixgA 358 5.16e+01 2waeA 680 5.17e+01 1ffyA 917 5.25e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 3fseA 365 5.33e+01 1up8A 598 5.36e+01 a.111.1.2 99710 3hhwK 421 5.39e+01 3f2bA 1041 5.39e+01 1vr5A 547 5.39e+01 c.94.1.1 120437 3g7kA 391 5.40e+01 3lumA 262 5.42e+01 1iomA 377 5.46e+01 a.103.1.1 83698 1b71A 191 5.52e+01 1ryt a.25.1.1,g.41.5.1 16647,45246 2x49A 333 5.54e+01 1adjA 421 5.55e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 1qdlB 195 5.57e+01 1qdlB c.23.16.1 31437 2gk3A 256 5.61e+01 c.23.16.9 147123 2o7iA 592 5.63e+01 1vqoB 338 5.64e+01 b.43.3.2 120363 3l07A 285 5.66e+01 1czaN 917 5.71e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 3fgqA 397 5.72e+01 3mbfA 342 5.76e+01 2gakA 391 5.82e+01 2ig7A 401 5.87e+01 3g15A 401 5.93e+01 1io2A 213 5.95e+01 1ekeA c.55.3.1 62612 2qr6A 393 6.05e+01 1upsA 420 6.06e+01 b.29.1.2,b.42.2.3 113394,113395 2occA 514 6.14e+01 2occA f.24.1.1 43518 1fmjA 351 6.17e+01 c.37.1.5 59879 3llwA 311 6.24e+01 1w63A 618 6.37e+01 i.23.1.1 109192 1mhsA 920 6.39e+01 i.18.1.1 79130 3dc5A 195 6.39e+01 3lppA 898 6.45e+01 2qulA 290 6.49e+01 1efyA 350 6.52e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1dxjA 242 6.53e+01 1cnsA d.2.1.1 36244 2gj4A 824 6.54e+01 c.87.1.4 135256 2wadA 680 6.59e+01 1mzyA 333 6.62e+01 b.6.1.3,b.6.1.3 103848,103849 3h1tA 590 6.65e+01 2qvjA 421 6.66e+01 3kt7A 633 6.66e+01 1tcvA 287 6.67e+01 1t64A 377 6.72e+01 c.42.1.2 106543 1f3lA 321 6.74e+01 1g6q2 c.66.1.6 59630 2b4gA 317 6.75e+01 c.1.4.1 127829 2bfwA 200 6.82e+01 c.87.1.8 128456 1pbtA 244 6.85e+01 c.124.1.1 94416 2qqhA 334 6.98e+01 3dyjA 332 7.02e+01 3dhiB 327 7.05e+01 3cb0A 173 7.05e+01 1h8lA 380 7.06e+01 b.3.2.1,c.56.5.1 65737,65738 1jj2B 337 7.08e+01 1ffkB b.43.3.2 63086 1mdcA 131 7.08e+01 b.60.1.2 27198 1mdc 133 7.10e+01 1hmt 2p8eA 307 7.11e+01 3h5qA 436 7.22e+01 1lfoA 127 7.25e+01 b.60.1.2 27223 1lj8A 493 7.26e+01 a.100.1.9,c.2.1.6 90392,90393 1nal1 297 7.26e+01 1nal3 1vlgA 176 7.27e+01 a.25.1.1 108816 1rkuA 206 7.29e+01 c.108.1.11 97627 2o4vA 411 7.29e+01 3lunA 262 7.31e+01 2bmoA 447 7.34e+01 b.33.1.2,d.129.3.3 128804,128805 2wzgA 525 7.35e+01 2pl5A 366 7.36e+01 c.69.1.40 149611 2i6xA 211 7.39e+01 2o6yA 521 7.43e+01 3c61A 314 7.46e+01 1lkoA 191 7.58e+01 a.25.1.1,g.41.5.1 78063,78064 1dq3A 454 7.58e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2qizA 982 7.59e+01 3e6mA 161 7.66e+01 2j7tA 302 7.68e+01 3e57A 211 7.70e+01 2r2cA 183 7.70e+01 2fytA 340 7.78e+01 c.66.1.6 134391 3ismC 359 7.78e+01 3fkkA 309 7.79e+01 2vrnA 190 7.79e+01 2hs8A 402 7.81e+01 3grlA 651 7.83e+01 1yr2A 741 7.84e+01 3fkrA 309 7.87e+01 2pq6A 482 7.88e+01 c.87.1.10 149785 1p80A 753 7.93e+01 c.23.16.3,e.5.1.1 94337,94338 1z5vA 474 7.99e+01