# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rcwA 214 2.189e-25 a.132.1.4 97299 2qzcA 210 1.905e-13 3ddeA 233 2.752e-09 3ibxA 222 6.424e-07 1rtwA 207 8.731e-07 a.132.1.3 97823 1tyhA 222 3.415e-06 a.132.1.3 107458 2qcxA 223 4.205e-06 1yakA 220 5.871e-06 a.132.1.3 122833 2rd3A 222 6.149e-06 1otvA 255 6.508e-06 a.132.1.4 93526 3mvuA 226 1.229e-05 1uddA 216 7.793e-05 a.132.1.3 107776 2q4xA 216 1.791e-03 a.132.1.3 139880 1z72A 217 3.694e-03 a.132.1.3 124583 2f2gA 216 3.887e-03 a.132.1.3 132816 3hnhA 239 4.160e-03 3hlxA 255 1.532e-02 3hmlA 238 5.057e-02 3bjdA 322 5.120e-02 2a2mA 232 4.676e-01 a.132.1.3 126039 1din 234 5.758e-01 1din 2b61A 358 1.419e+00 c.69.1.40 146086 1dqtA 118 1.707e+00 1ah1 b.1.1.1 20653 1ggvA 233 1.725e+00 1din c.69.1.9 34683 3ffrA 362 1.810e+00 1w23A 361 2.512e+00 c.67.1.4 114088 1b0nB 32 3.315e+00 1b0nB a.34.1.1 17002 2ocgA 255 6.337e+00 2vavA 349 6.407e+00 c.69.1.40 152844 2fyfA 369 7.129e+00 1i4fA 276 7.518e+00 1agdA b.1.1.2 61687 d.19.1.1 61688 3e0zA 108 8.007e+00 1e88A 161 1.000e+01 g.14.1.2 44669 g.14.1.2 44670 g.27.1.1 44950 2c0rA 362 1.020e+01 c.67.1.4 129604 3f75A 224 1.115e+01 2z34C 22 1.121e+01 3bdiA 208 1.167e+01 3etpA 188 1.169e+01 1jqsB 33 1.171e+01 i.1.1.1 63238 1vdrA 158 1.276e+01 1vdrA c.71.1.1 34893 2qnlA 163 1.289e+01 2vatA 348 1.290e+01 c.69.1.40 152831 1kjvA 277 1.338e+01 b.1.1.2 77421 d.19.1.1 77422 3ia4A 162 1.646e+01 3dfr 163 1.746e+01 3dfr 2glsA 469 1.757e+01 1lgr d.15.9.1 37851 d.128.1.1 41181 3fxhA 114 1.836e+01 2ojwA 361 1.844e+01 1zi8A 234 1.899e+01 1me4A 216 2.013e+01 d.3.1.1 79023 1s4cA 151 2.110e+01 b.82.2.7 118860 3bhgA 449 2.163e+01 3it4A 194 2.201e+01 3m5uA 359 2.202e+01 2km6A 97 2.216e+01 3ix9A 167 2.289e+01 3bdwB 117 2.322e+01 3i06A 215 2.344e+01 1f52A 469 2.351e+01 1lgr d.15.9.1 37839 d.128.1.1 41169 2ckkA 121 2.428e+01 2zzaA 162 2.428e+01 3e0jB 144 2.463e+01 1rpa 343 2.482e+01 1cviA 1agdA 277 2.493e+01 1agdA b.1.1.2 20741 d.19.1.1 38260 4dfrA 160 2.494e+01 1vdrA c.71.1.1 34822 3imkA 159 2.503e+01 1zdrA 162 2.552e+01 1jkmA 359 2.554e+01 1jkmA c.69.1.2 34633 1szhA 148 2.560e+01 a.226.1.1 106157 3dauA 160 2.580e+01 1ra9A 160 2.775e+01 c.71.1.1 34820 1draA 160 2.825e+01 1vdrA c.71.1.1 34831 1ddsA 160 2.896e+01 1vdrA c.71.1.1 34858 1t0aA 159 2.907e+01 d.79.5.1 112192 3cgxA 232 2.917e+01 2cruA 119 2.918e+01 a.5.6.1 130742 3fl8A 167 2.976e+01 3f0hA 363 3.030e+01 3gzhA 470 3.069e+01 2oulA 242 3.071e+01 d.3.1.1 149025 1wwmA 181 3.089e+01 a.132.1.3 121363 2pl5A 363 3.099e+01 c.69.1.40 149611 2rexB 172 3.099e+01 3fq0A 158 3.135e+01 2jgoA 30 3.140e+01 k.4.1.1 148051 3f0dA 156 3.180e+01 1edzA 318 3.210e+01 1ee9A c.2.1.7 30287 c.58.1.2 33935 2i9fA 60 3.350e+01 d.254.1.1 147567 3f0uX 158 3.350e+01 1oqyA 364 3.463e+01 a.5.2.1 93439 a.5.2.1 93440 a.189.1.1 93441 d.15.1.1 93442 1rvkA 382 3.512e+01 c.1.11.2 97928 d.54.1.1 97929 2c55A 53 3.568e+01 1gx1A 158 3.596e+01 d.79.5.1 70675 2khaA 114 3.633e+01 1auoA 219 3.674e+01 1auoA c.69.1.14 34716 2w9hA 158 3.701e+01 1v7zA 258 3.730e+01 c.125.1.1 100488 2fziA 207 3.771e+01 c.71.1.1 134448 2pieA 133 3.771e+01 b.26.1.2 149508 1k47A 323 3.819e+01 d.14.1.5 72040 d.58.26.4 72041 3i1mC 207 3.926e+01 2d9gA 54 3.943e+01 3i1iA 374 3.946e+01