PFRMAT SS
TARGET T0627
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0627.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 45
METHOD
MODEL 1
M C 0.766
I C 0.608
D C 0.344
T H 0.443
F H 0.453
E H 0.409
R T 0.377
T C 0.433
G C 0.505
P T 0.357
L T 0.302
M T 0.332
E C 0.345
A C 0.446
S C 0.511
S C 0.674
Y C 0.845
P H 0.806
A H 0.955
W H 0.979
A H 0.979
Q H 0.984
Q H 0.982
L H 0.977
I H 0.952
N H 0.911
D H 0.792
C H 0.636
S C 0.544
P H 0.892
A H 0.903
K H 0.898
A H 0.926
R H 0.908
V H 0.900
V H 0.821
E H 0.578
H C 0.764
E H 0.739
L H 0.827
Y H 0.739
Q H 0.875
Q H 0.907
M H 0.947
R H 0.865
D H 0.433
A C 0.629
K C 0.667
L C 0.645
S C 0.841
P H 0.892
Q H 0.936
I H 0.959
M H 0.985
R H 0.996
Q H 0.989
Y H 0.980
L H 0.967
I H 0.956
G H 0.894
G H 0.810
W H 0.937
P H 0.946
V H 0.973
V H 0.978
E H 0.983
Q H 0.983
F H 0.986
A H 0.981
V H 0.976
Y H 0.973
M H 0.967
A H 0.929
K H 0.929
N H 0.904
L H 0.878
T H 0.702
K H 0.500
T C 0.399
R T 0.354
F T 0.398
G T 0.385
R T 0.392
H T 0.390
P H 0.520
G C 0.377
E H 0.860
D H 0.959
M H 0.971
A H 0.982
R H 0.993
R H 0.992
W H 0.991
L H 0.983
M H 0.971
R H 0.930
N H 0.900
I H 0.923
R H 0.861
V H 0.819
E H 0.776
L H 0.786
N H 0.796
H H 0.812
A H 0.940
D H 0.941
Y H 0.952
W H 0.974
V H 0.986
N H 0.991
W H 0.993
C H 0.987
A H 0.972
A H 0.956
H H 0.915
D C 0.955
V C 0.939
T C 0.933
L H 0.902
E H 0.845
D H 0.795
L H 0.923
H H 0.896
D H 0.583
Q C 0.629
R C 0.701
V C 0.678
A C 0.749
P H 0.903
E H 0.925
L H 0.949
H H 0.971
A H 0.974
L H 0.975
S H 0.981
H H 0.987
W H 0.982
C H 0.978
W H 0.953
Q H 0.908
T H 0.852
S H 0.577
S H 0.378
S H 0.369
D C 0.428
S H 0.481
L H 0.904
A H 0.954
V H 0.969
A H 0.971
M H 0.987
A H 0.986
A H 0.979
T H 0.983
N H 0.933
Y H 0.914
A H 0.889
I H 0.938
E H 0.937
G H 0.931
A H 0.908
T H 0.838
G H 0.930
E H 0.985
W H 0.990
S H 0.990
A H 0.988
V H 0.959
V H 0.932
C H 0.885
S H 0.803
T H 0.662
G H 0.656
V H 0.525
Y H 0.452
A H 0.317
E T 0.320
A T 0.383
F C 0.417
A T 0.401
E T 0.407
E T 0.415
T T 0.369
R C 0.637
K H 0.824
K H 0.973
S H 0.989
M H 0.998
K H 0.998
W H 0.998
L H 0.997
K H 0.994
M H 0.987
H H 0.959
A H 0.900
Q H 0.559
Y H 0.608
D T 0.384
D T 0.394
A H 0.616
H C 0.466
P H 0.786
W H 0.922
E H 0.956
A H 0.978
L H 0.983
E H 0.987
I H 0.993
I H 0.986
C H 0.979
T H 0.942
L H 0.898
V H 0.770
G T 0.358
N T 0.389
K C 0.510
P C 0.496
S C 0.569
L H 0.837
Q H 0.890
L H 0.937
Q H 0.985
A H 0.991
E H 0.990
L H 0.992
R H 0.998
Q H 0.998
A H 0.999
V H 0.998
T H 0.997
K H 0.991
S H 0.987
Y H 0.992
D H 0.987
Y H 0.987
M H 0.989
Y H 0.992
L H 0.993
F H 0.993
L H 0.980
E H 0.958
R H 0.945
C H 0.894
I H 0.636
Q C 0.383
L T 0.379
D T 0.322
K C 0.274
V C 0.409
K C 0.538
S C 0.422
P T 0.383
R T 0.373
G E 0.393
R E 0.574
V E 0.585
A E 0.603
A E 0.523
L E 0.421
E C 0.600
M C 0.969
END