# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1snlA 100 7.848e-02 a.39.1.7 105820 3cz6A 152 5.917e-01 1kiuB 280 6.332e-01 b.2.3.2 72525 b.2.3.2 72526 1nqjA 97 9.023e-01 b.23.2.1 86031 1d1rA 84 1.337e+00 1d1rA d.64.1.1 39548 1jj2R 82 1.926e+00 1ffkP d.12.1.1 63103 1tkkA 360 2.489e+00 c.1.11.2 107089 d.54.1.1 107090 3a4uB 66 2.494e+00 3lcpC 69 2.502e+00 1vqoS 82 2.767e+00 d.12.1.1 120380 1rypB 251 3.315e+00 1rypB d.153.1.4 41933 1fjgP 84 3.318e+00 1emwA d.27.1.1 38444 2durA 252 3.697e+00 2fvvA 136 3.897e+00 d.113.1.1 134226 3emwA 201 3.925e+00 1wpbA 169 3.998e+00 a.233.1.1 114783 2ct5A 74 4.097e+00 g.37.1.6 130790 2apsA 156 5.059e+00 1yaiA b.1.8.1 22298 2vs7A 180 5.106e+00 3fv9A 364 6.617e+00 3h20A 289 7.434e+00 1rypE 243 8.052e+00 1rypE d.153.1.4 41936 1avsA 82 8.181e+00 1cll a.39.1.5 17226 1pvaA 110 8.531e+00 1a75A a.39.1.4 17207 1exrA 147 9.189e+00 1cll a.39.1.5 17299 1qtxA 149 9.204e+00 k.21.1.1 88375 3k2yA 104 9.268e+00 1vrkA 149 9.504e+00 1cll k.21.1.1 46451 3gp2A 147 9.787e+00 1rwyA 110 1.008e+01 a.39.1.4 98002 2o5gA 148 1.011e+01 a.39.1.5 148598 1yaiA 152 1.056e+01 1yaiA b.1.8.1 22289 1ug3A 324 1.068e+01 a.118.1.14 119671 a.118.1.14 119672 1qs7A 146 1.089e+01 k.21.1.1 88373 1ggzA 145 1.098e+01 a.39.1.5 70176 1ncx 163 1.118e+01 1ncx 1t8hA 273 1.131e+01 d.194.1.2 106664 2zndA 168 1.137e+01 1sraA 152 1.146e+01 a.39.1.3 17190 2vzpA 127 1.182e+01 3bboO 136 1.191e+01 i.1.1.2 155086 1tr1A 448 1.201e+01 1e70M c.1.8.4 28957 1k9uA 77 1.202e+01 a.39.1.10 84348 2f3yA 147 1.212e+01 a.39.1.5 146994 2mysC 135 1.215e+01 1wdcC a.39.1.5 17323 3dg6A 367 1.233e+01 1y0gA 170 1.246e+01 b.61.6.1 116299 2nxqA 67 1.247e+01 2uubP 84 1.267e+01 d.27.1.1 139947 1y1xA 183 1.278e+01 a.39.1.8 116374 1u04A 714 1.309e+01 b.34.14.1 107539 c.55.3.10 107540 2j01Q 137 1.315e+01 d.41.4.2 145573 1hstA 75 1.346e+01 1hstA a.4.5.13 16140 1b8rA 109 1.353e+01 1a75A a.39.1.4 17201 3h12A 393 1.367e+01 1bm8 100 1.370e+01 1bm8 1cll 145 1.395e+01 1cll 2aaoA 148 1.411e+01 2nppB 389 1.419e+01 a.118.1.20 138445 1scmB 139 1.490e+01 1wdcB a.39.1.5 17304 1gycA 500 1.491e+01 b.6.1.3 70748 b.6.1.3 70749 b.6.1.3 70750 1e4iA 448 1.503e+01 1e70M c.1.8.4 59225 1mucA 361 1.506e+01 1mucA c.1.11.2 29236 d.54.1.1 38880 2kn2A 93 1.589e+01 1pbgA 455 1.620e+01 1e70M c.1.8.4 28946 3loyA 634 1.620e+01 2zadA 345 1.628e+01 1xfxO 147 1.630e+01 a.39.1.5 121955 3dkqA 231 1.660e+01 1a75A 107 1.683e+01 1a75A a.39.1.4 17216 3dnzA 317 1.690e+01 1oalA 152 1.703e+01 b.1.8.1 86739 2hjjA 67 1.726e+01 d.50.3.3 147295 1wdcB 143 1.731e+01 1wdcB a.39.1.5 17302 1w7jB 132 1.756e+01 a.39.1.5 120690 2qdeA 376 1.791e+01 2h7dB 35 1.806e+01 1fexA 60 1.826e+01 a.4.1.3 59803 1e0cA 272 1.834e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 2pvbA 108 1.855e+01 1a75A a.39.1.4 17205 2gshA 404 1.871e+01 1v02A 485 1.876e+01 c.1.8.4 108194 1c0wA 174 1.903e+01 1bi0 a.4.5.24 16211 a.76.1.1 18417 b.34.1.2 24455 3caxA 356 1.920e+01 1noaA 114 1.946e+01 b.1.7.1 22208 1qx2A 77 1.971e+01 a.39.1.1 104622 2ev1A 186 1.992e+01 2b0rA 165 2.043e+01 3f6zB 94 2.046e+01 1y0vH 147 2.063e+01 a.39.1.5 145893 2gsvA 68 2.068e+01 a.23.7.1 147174 2pgwA 372 2.076e+01 2w1wA 131 2.080e+01 2obhA 144 2.133e+01 a.39.1.5 148716 2h79A 268 2.147e+01 3fvdA 362 2.149e+01 2dtrA 215 2.174e+01 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 3mquA 170 2.182e+01 1kk8B 140 2.191e+01 a.39.1.5 77430 2a40B 261 2.197e+01 d.151.1.1 126139 2p0iA 394 2.208e+01 2jx3A 111 2.241e+01 1tafA 69 2.317e+01 1tafA a.22.1.3 16481 1lbd 239 2.319e+01 1lbd 2vqeP 84 2.329e+01 i.1.1.1 153440 1zo0A 127 2.416e+01 d.108.1.7 125416 2a6zA 223 2.437e+01 b.29.1.13 126319 2qgoA 115 2.437e+01 2rdxA 370 2.440e+01 1auiB 166 2.461e+01 1auiB a.39.1.5 17325 2fcdA 79 2.481e+01 2ct9A 186 2.484e+01 3hj9A 216 2.500e+01 1mdlA 358 2.501e+01 c.1.11.2 29247 d.54.1.1 38891 2gv5A 150 2.592e+01 1mvwC 148 2.600e+01 i.15.1.1 79525 1e8aA 88 2.615e+01 1b4cA a.39.1.2 17188 3fxgA 408 2.655e+01 2kqyA 109 2.657e+01 1vqoD 141 2.681e+01 d.77.1.1 120365 2vzsA 858 2.688e+01 b.1.4.1 153727 b.1.4.1 153728 b.1.4.1 153729 b.18.1.5 153730 c.1.8.3 153731 1db1A 251 2.708e+01 1db1A a.123.1.1 19329 1t8tA 269 2.721e+01 c.37.1.5 106685 2kszA 77 2.766e+01 3cxjA 145 2.788e+01 1sjdA 368 2.819e+01 c.1.11.2 105632 d.54.1.1 105633 3f45A 110 2.882e+01 2p3zA 406 2.932e+01 1g5yA 229 2.947e+01 1lbd a.123.1.1 60294 3fwbA 154 2.956e+01 2pqnB 21 2.957e+01 2w47A 136 2.964e+01 2pceA 373 2.980e+01 2jjzA 111 2.987e+01 1wdcC 153 2.992e+01 1wdcC a.39.1.5 17317 2qgyA 377 3.042e+01 1a2xA 159 3.100e+01 1ncx a.39.1.5 17251 2aucA 117 3.110e+01 5palA 110 3.113e+01 a.39.1.4 17215 3l1xA 76 3.118e+01 1q8rA 119 3.158e+01 d.79.6.1 96225 3cyjA 360 3.176e+01 1tubA 441 3.185e+01 1tubA c.32.1.1 31751 d.79.2.1 39803 2vtcA 229 3.204e+01 2b7eA 60 3.241e+01 a.159.2.1 146091 1xvjA 110 3.252e+01 1uhnA 190 3.269e+01 a.39.1.5 99399 1sra 152 3.291e+01 1sra 2jk9A 203 3.301e+01 3i6eA 357 3.303e+01 1klfB 280 3.324e+01 b.2.3.2 72684 b.2.3.2 72685 1yeyA 426 3.332e+01 c.1.11.2 116664 d.54.1.1 116665 1wjxA 113 3.335e+01 b.111.1.1 114716 2qacA 145 3.342e+01 1jpdX 319 3.358e+01 c.1.11.2 67014 d.54.1.1 67015 1vdiA 53 3.374e+01 j.22.1.1 119992 2ps2A 362 3.379e+01 2bl0B 146 3.394e+01 2d5rA 253 3.444e+01 c.55.3.9 146466 3cjiB 239 3.444e+01 3js8A 539 3.476e+01 2jeeA 79 3.483e+01 1i82A 190 3.516e+01 1i82A b.1.9.2 61937 1ms9A 623 3.611e+01 b.29.1.15 85088 b.68.1.1 85089 1urjA 1029 3.696e+01 e.58.1.1 113410 1rroA 109 3.711e+01 a.39.1.4 17195 2rfpA 170 3.758e+01 1g0uD 231 3.760e+01 d.153.1.4 41949 3kxqA 238 3.809e+01 1hg4A 241 3.870e+01 1lbd a.123.1.1 19333 1g33A 74 3.918e+01 a.39.1.4 65121 2bl0C 143 3.921e+01 2zfdA 184 3.949e+01 a.39.1.5 154406 1b24A 173 3.989e+01 1b24A d.95.2.1 40573 d.95.2.1 40574