PFRMAT SS TARGET T0621 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0621.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 5 METHOD MODEL 1 N C 0.925 P C 0.804 N C 0.602 P C 0.463 I E 0.444 S E 0.641 I E 0.681 P E 0.727 I E 0.575 D E 0.316 L G 0.537 S G 0.509 Q G 0.488 A T 0.491 G T 0.440 S C 0.451 V E 0.418 V E 0.480 E E 0.582 K E 0.640 E E 0.758 V E 0.849 K E 0.825 I E 0.625 E T 0.327 E T 0.394 S T 0.428 W T 0.359 S E 0.421 Y E 0.660 H E 0.754 L E 0.921 I E 0.957 L E 0.940 Q E 0.925 F E 0.853 A E 0.835 V E 0.730 H E 0.599 D E 0.501 R E 0.310 K H 0.297 E T 0.377 D T 0.493 G T 0.513 G T 0.433 L T 0.377 D T 0.336 G H 0.456 K H 0.479 R H 0.381 V H 0.360 W E 0.432 K E 0.449 F E 0.492 L E 0.549 G E 0.462 F E 0.325 N T 0.380 S T 0.408 Y C 0.344 D T 0.415 P T 0.657 R T 0.666 D T 0.731 G T 0.652 K C 0.381 Q E 0.337 V E 0.361 G C 0.455 Y C 0.391 V C 0.473 D C 0.446 Y H 0.503 R H 0.619 L H 0.707 A H 0.710 K H 0.680 S H 0.635 E H 0.604 L H 0.611 G H 0.411 D H 0.348 L T 0.305 I T 0.335 D T 0.475 E T 0.415 T T 0.398 Y T 0.339 D T 0.367 C T 0.536 D T 0.632 G T 0.518 T E 0.677 V E 0.881 V E 0.925 P E 0.905 I E 0.904 K E 0.982 I E 0.990 T E 0.991 I E 0.994 H E 0.985 Q E 0.969 I E 0.865 N E 0.480 Q T 0.786 D T 0.822 N T 0.733 T E 0.404 K E 0.764 K E 0.915 L E 0.946 I E 0.943 A E 0.924 D E 0.808 N E 0.863 L E 0.931 Y E 0.930 M E 0.848 T E 0.524 K T 0.531 G T 0.642 N T 0.628 G T 0.519 S T 0.419 G T 0.373 A H 0.337 Y H 0.429 T H 0.436 R H 0.509 D H 0.400 I E 0.365 T E 0.427 T E 0.596 I E 0.663 S E 0.620 L T 0.428 D T 0.576 K T 0.664 G T 0.557 K E 0.514 Y E 0.918 I E 0.971 F E 0.981 R E 0.960 I E 0.943 E E 0.787 N E 0.528 I H 0.334 E H 0.390 A H 0.554 F H 0.560 S H 0.672 E H 0.676 M H 0.702 I H 0.670 G H 0.311 R C 0.542 K C 0.711 V E 0.625 D E 0.931 F E 0.985 T E 0.986 I E 0.975 Y E 0.934 I E 0.803 N E 0.594 K E 0.415 R C 0.560 D C 0.774 K C 0.863 END