# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ox7A 155 1.86e+00 b.172.1.1 149054 2vw2A 697 3.05e+00 2jkbA 686 3.06e+00 1d3yA 301 3.07e+00 1d3yA e.12.1.1 43252 3hhsB 684 3.30e+00 1han 297 4.44e+00 1han 2h62C 129 4.56e+00 g.7.1.3 136179 2prdA 174 4.63e+00 b.40.5.1 25435 1lkdA 297 4.99e+00 d.32.1.3 78059 d.32.1.3 78060 1dykA 394 5.04e+00 1dykA b.29.1.4 24223 b.29.1.4 24224 1rewC 135 6.91e+00 g.7.1.3 97336 1i0rA 169 7.21e+00 1i0rA b.45.1.2 61489 3d60A 314 7.48e+00 3cu9A 314 7.56e+00 3d61A 314 7.64e+00 2nnrA 110 7.64e+00 b.1.26.1 148321 2ecuA 149 8.16e+00 1v9kA 228 8.24e+00 d.265.1.3 108449 1xpiA 231 8.31e+00 2htaA 309 8.32e+00 1spiA 358 8.32e+00 1frpA e.7.1.1 42939 2pr5A 132 8.79e+00 1kyaA 499 8.99e+00 b.6.1.3 73203 b.6.1.3 73204 b.6.1.3 73205 1h4gA 207 9.02e+00 b.29.1.11 70863 1yt5A 258 9.20e+00 1rh1A 511 9.53e+00 b.110.1.1 97462 f.1.1.1 97463 3gyrA 612 9.78e+00 3ebtA 132 9.98e+00 d.17.4.9 158086 2axoA 270 1.01e+01 c.47.1.19 127496 1ah1 129 1.09e+01 1ah1 2h7wA 131 1.09e+01 b.1.26.1 136225 1olmA 403 1.11e+01 a.5.3.1 104008 b.132.1.1 104009 c.13.1.1 104010 1mzyA 333 1.11e+01 b.6.1.3 103848 b.6.1.3 103849 1wl7A 312 1.12e+01 b.67.2.1 120996 1kopA 223 1.12e+01 2cba b.74.1.1 27966 1xj4A 119 1.14e+01 d.110.3.2 122027 3divA 499 1.18e+01 2vv6A 119 1.20e+01 2h62A 114 1.27e+01 g.17.1.2 136177 1vyfA 135 1.28e+01 b.60.1.2 108902 1cid 177 1.30e+01 1cid 1cidA 177 1.30e+01 b.1.1.1 19740 b.1.1.3 21679 1kjlA 146 1.31e+01 b.29.1.3 118689 2h5uA 499 1.33e+01 3hqfA 181 1.36e+01 3mjqA 126 1.39e+01 2x44D 131 1.40e+01 2nn8A 138 1.52e+01 b.29.1.3 138392 3m2lA 294 1.53e+01 1v10A 521 1.54e+01 b.6.1.3 108224 b.6.1.3 108225 b.6.1.3 108226 3m4dA 293 1.56e+01 1an7A 136 1.63e+01 1seiA d.140.1.1 41465 2w47A 144 1.64e+01 2cfmA 561 1.66e+01 2k46A 190 1.66e+01 1a3k 137 1.66e+01 1a3k 1lswA 131 1.73e+01 d.110.3.2 78181 3fpxA 499 1.76e+01 2w1wA 146 1.79e+01 2qt6A 498 1.82e+01 1y7wA 291 1.84e+01 2hrgA 496 1.88e+01 3kptA 355 1.90e+01 3eesA 153 1.94e+01 3f9sA 146 1.98e+01 1drmA 131 2.00e+01 1drmA d.110.3.2 40908 1itwA 741 2.00e+01 c.77.1.2 76793 2q5wE 149 2.01e+01 2achA 360 2.02e+01 1c8oA e.1.1.1 42626 2wdxA 523 2.10e+01 1r6vA 671 2.12e+01 c.41.1.1 111710 1d2iA 223 2.16e+01 1d2iA c.52.1.5 33297 1dfmA 223 2.17e+01 1d2iA c.52.1.5 33295 3c8cA 240 2.28e+01 1t5eA 360 2.34e+01 f.46.1.1 106436 2e8yA 718 2.35e+01 3ff0A 163 2.39e+01 3dj1A 124 2.40e+01 2f2aB 483 2.42e+01 a.182.1.2 132802 d.128.1.5 132803 3i4qA 176 2.45e+01 1x88A 359 2.52e+01 c.37.1.9 121797 1fvuA 133 2.54e+01 1ixxB d.169.1.1 42345 1j5pA 253 2.55e+01 c.2.1.3 83092 d.81.1.3 71577 1i8lC 126 2.55e+01 1ah1 b.1.1.1 61974 3d5yA 314 2.56e+01 1kkhA 317 2.56e+01 d.14.1.5 72645 d.58.26.3 72646 3kd8A 399 2.57e+01 2w5nA 367 2.58e+01 1q0bA 367 2.59e+01 c.37.1.9 95502 1iuqA 367 2.62e+01 c.112.1.1 90703 2vveA 254 2.67e+01 3gc3A 385 2.69e+01 3f8yA 187 2.74e+01 1xqbA 247 2.75e+01 e.56.1.1 115839 2b3gA 123 2.80e+01 b.40.4.3 127786 3m3rA 293 2.81e+01 3cerA 343 2.90e+01 2vvdA 177 2.90e+01 1mh0A 287 2.91e+01 b.47.1.2 79110 2zs6B 420 3.05e+01 1ew0A 130 3.06e+01 1drmA d.110.3.2 40905 3d80A 186 3.07e+01 2vbuA 136 3.10e+01 b.43.5.2 152911 2fx7H 228 3.17e+01 b.1.1.1 134276 b.1.1.2 134277 2e56A 144 3.17e+01 2ccvA 101 3.17e+01 b.154.1.1 130258 3fq3A 197 3.20e+01 1qbeA 132 3.21e+01 1qbeA d.85.1.1 40138 2bgzA 299 3.25e+01 2zuxA 591 3.26e+01 1gskA 513 3.30e+01 b.6.1.3 83314 b.6.1.3 83315 b.6.1.3 83316 2qv7A 337 3.33e+01 e.52.1.2 151386 1kiuB 279 3.34e+01 b.2.3.2 72525 b.2.3.2 72526 1bxwA 172 3.37e+01 1bxwA f.4.1.1 43743 3bx7C 124 3.37e+01 1twlA 186 3.40e+01 b.40.5.1 112764 3k86A 185 3.40e+01 2z8rA 591 3.41e+01 1ln1A 214 3.43e+01 d.129.3.2 74038 1d2oA 187 3.53e+01 1d2oA b.3.5.1 22625 b.3.5.1 22626 3ebyA 163 3.57e+01 d.17.4.4 158087 2aqqA 164 3.60e+01 1ltlA 279 3.64e+01 b.40.4.11 84701 3g7mA 151 3.70e+01 3hbkA 245 3.71e+01 1k30A 368 3.75e+01 c.112.1.1 68067 1dunA 134 3.76e+01 b.85.4.1 28371 1gydB 315 3.82e+01 b.67.2.1 70751 1na6A 404 3.86e+01 b.142.1.1 91748 c.52.1.22 91749 1nciA 110 3.88e+01 1edhA b.1.6.1 22191 3f8zA 187 3.94e+01