# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xpiA 231 9.83e-01 1v9kA 228 9.85e-01 d.265.1.3 108449 2jkbA 686 1.17e+00 2vw2A 697 1.43e+00 2h62C 129 2.46e+00 g.7.1.3 136179 1rewC 135 2.56e+00 g.7.1.3 97336 1i0rA 169 2.72e+00 1i0rA b.45.1.2 61489 1xj4A 119 4.51e+00 d.110.3.2 122027 3mjqA 126 4.73e+00 2vv6A 119 4.74e+00 2x44D 131 5.13e+00 1d3yA 301 5.31e+00 1d3yA e.12.1.1 43252 2ox7A 155 5.60e+00 b.172.1.1 149054 2ckfB 174 5.69e+00 2ecuA 149 6.15e+00 1kopA 223 6.55e+00 2cba b.74.1.1 27966 1ud2A 480 6.57e+00 b.71.1.1 88469 c.1.8.1 88470 2pr5A 132 6.65e+00 2zs6B 420 7.45e+00 2aqqA 164 7.75e+00 1lswA 131 8.38e+00 d.110.3.2 78181 1drmA 131 8.76e+00 1drmA d.110.3.2 40908 1ew0A 130 9.09e+00 1drmA d.110.3.2 40905 2aqpA 164 9.19e+00 2gbwB 174 9.27e+00 2htaA 309 9.62e+00 1han 297 9.88e+00 1han 1iuqA 367 9.97e+00 c.112.1.1 90703 1fvuA 133 1.02e+01 1ixxB d.169.1.1 42345 3hhsB 684 1.18e+01 2rbcA 343 1.18e+01 1b66A 140 1.24e+01 1b66A d.96.1.2 40657 2h8eA 120 1.27e+01 1q0bA 367 1.28e+01 c.37.1.9 95502 3aagA 291 1.29e+01 1x88A 359 1.35e+01 c.37.1.9 121797 1q8rA 120 1.39e+01 d.79.6.1 96225 3cerA 343 1.40e+01 1q7lA 198 1.43e+01 c.56.5.4 96044 2mprA 421 1.44e+01 2mprA f.4.3.2 43788 2q4vA 170 1.46e+01 d.108.1.1 139878 1rh1A 511 1.48e+01 b.110.1.1 97462 f.1.1.1 97463 3f8yA 187 1.52e+01 1pn0A 665 1.54e+01 c.3.1.2 94918 c.47.1.10 94919 d.16.1.2 94920 1nwwA 149 1.55e+01 d.17.4.8 86306 3f91A 187 1.57e+01 1a3k 137 1.59e+01 1a3k 3d80A 186 1.60e+01 3f8zA 187 1.61e+01 1r6vA 671 1.65e+01 c.41.1.1 111710 3f9sA 146 1.68e+01 1lkdA 297 1.70e+01 d.32.1.3 78059 d.32.1.3 78060 1oo2A 119 1.73e+01 b.3.4.1 93372 2e56A 144 1.78e+01 1v10A 521 1.80e+01 b.6.1.3 108224 b.6.1.3 108225 b.6.1.3 108226 1mh0A 287 1.81e+01 b.47.1.2 79110 2aneA 125 1.82e+01 b.122.1.10 127046 2q7xA 326 1.83e+01 1dfx 125 1.88e+01 1dfx 3ebyA 163 1.91e+01 d.17.4.4 158087 1uscA 178 1.96e+01 b.45.1.2 99860 1y7wA 291 1.98e+01 2qv7A 337 1.99e+01 e.52.1.2 151386 1i8aA 189 2.02e+01 1i82A b.1.9.2 61951 1i82A 189 2.03e+01 1i82A b.1.9.2 61937 3c8cA 240 2.09e+01 3bx7C 124 2.09e+01 2quoA 126 2.12e+01 1h4gA 207 2.15e+01 b.29.1.11 70863 2nnrA 110 2.16e+01 b.1.26.1 148321 1kjlA 146 2.18e+01 b.29.1.3 118689 1i8lC 126 2.20e+01 1ah1 b.1.1.1 61974 3dlwA 411 2.26e+01 2nn8A 138 2.26e+01 b.29.1.3 138392 1u9aA 160 2.28e+01 1u9aA d.20.1.1 38333 3dsbA 157 2.29e+01 1qbeA 132 2.30e+01 1qbeA d.85.1.1 40138 3dedA 113 2.32e+01 d.145.1.4 157567 3fpnA 119 2.33e+01 1ah1 129 2.33e+01 1ah1 1bucA 383 2.34e+01 3mdeA a.29.3.1 16590 e.6.1.1 42851 3eyaA 549 2.35e+01 1kmvA 186 2.42e+01 c.71.1.1 72757 1nvtA 287 2.44e+01 c.2.1.7 86270 c.58.1.5 86271 1jj2F 119 2.45e+01 1ffkE d.79.3.1 63091 2f2aB 483 2.49e+01 a.182.1.2 132802 d.128.1.5 132803 2jbwA 386 2.54e+01 c.69.1.41 147962 2h41A 95 2.58e+01 1itwA 741 2.58e+01 c.77.1.2 76793 1es7B 89 2.63e+01 1es7B g.7.1.3 44465 1h0aA 158 2.64e+01 a.118.9.1 76434 3greA 437 2.65e+01 1vmoA 163 2.67e+01 1vmoA b.77.1.1 27974 3kd8A 399 2.67e+01 3dj1A 124 2.67e+01 1vqoF 120 2.68e+01 d.79.3.1 120368 2hqsA 415 2.70e+01 b.68.4.1 136662 c.51.2.1 136663 2rjlA 184 2.70e+01 1wy2A 351 2.70e+01 2grrA 161 2.71e+01 2q81A 119 2.72e+01 2dtr 226 2.73e+01 1bi0 2qugA 394 2.79e+01 2b0tA 738 2.82e+01 1a0jA 223 2.82e+01 5ptp b.47.1.2 26002 1dykA 394 2.83e+01 1dykA b.29.1.4 24223 b.29.1.4 24224 2h7wA 131 2.85e+01 b.1.26.1 136225 2q5wE 149 2.87e+01 3k86A 185 2.88e+01 1fohA 664 2.89e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 3inmA 425 2.90e+01 1mhnA 59 2.90e+01 b.34.9.1 84964 2p13A 90 2.92e+01 d.145.1.4 149152 3me7A 170 2.93e+01 1ucyH 150 2.94e+01 1ucyH 1ty9A 222 2.95e+01 b.45.1.1 112827 1spiA 358 2.96e+01 1frpA e.7.1.1 42939 1ynaA 194 2.96e+01 b.29.1.11 24335 2wdxA 523 2.98e+01 1lybB 241 2.98e+01 1smrA 1kxlA 199 3.00e+01 b.40.4.3 73155 2ra6A 166 3.01e+01 1egaA 301 3.05e+01 1egaA c.37.1.8 32150 d.52.3.1 38836 1j5pA 253 3.08e+01 c.2.1.3 83092 d.81.1.3 71577 1t6cA 315 3.08e+01 c.55.1.8 106558 c.55.1.8 106559 3bnkA 196 3.09e+01 3f1sA 385 3.10e+01 1ewkA 490 3.10e+01 1ewkA c.93.1.1 35712 2h7aA 110 3.15e+01 d.350.1.1 147236 1f9yA 158 3.15e+01 d.58.30.1 83249 3h4aA 158 3.15e+01 3ip0A 158 3.15e+01 3ig4A 427 3.21e+01 1crzA 403 3.24e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 2w1wA 146 3.27e+01 3e0jA 476 3.27e+01 2prdA 174 3.28e+01 b.40.5.1 25435 3bwlA 126 3.33e+01 2eb0A 307 3.35e+01 1v5wA 343 3.38e+01 c.37.1.11 108387 2qq9A 226 3.42e+01 1h7zA 194 3.44e+01 1qhvA b.21.1.1 60733 2ig6A 150 3.44e+01 2vveA 254 3.45e+01 3l9yA 154 3.45e+01 3d61A 314 3.49e+01 2o9cA 342 3.50e+01 d.110.2.1 148684 d.110.3.9 148685 2ostA 151 3.51e+01 1qlpA 394 3.52e+01 1ovaA e.1.1.1 42628 3d60A 314 3.59e+01 3d4eA 179 3.59e+01 3h0wA 266 3.63e+01 2atrA 138 3.67e+01 d.108.1.1 127305 2wugA 291 3.68e+01 3k0yA 229 3.70e+01 3cu9A 314 3.70e+01 2k46A 190 3.75e+01 2dtrA 226 3.75e+01 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1z3sA 217 3.78e+01 1gskA 513 3.78e+01 b.6.1.3 83314 b.6.1.3 83315 b.6.1.3 83316 1dt9A 437 3.80e+01 1dt9A c.55.4.2 33738 d.79.3.2 39815 d.91.1.1 40257 1kyaA 499 3.85e+01 b.6.1.3 73203 b.6.1.3 73204 b.6.1.3 73205 3hmpA 342 3.94e+01 1m9uA 241 3.96e+01 b.47.1.2 74601 2w47A 144 3.97e+01 1rtfB 252 3.99e+01 5ptp