# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k04A	162	10.34	a.24.14.1	67904
1xwsA	313	17.11	d.144.1.7	116133
1dvoA	152	21.84	a.136.1.1	19623
2bikB	313	25.16		
2ot3A	274	29.90	a.222.1.1	139311
2oltA	227	30.87		
1uanA	227	36.47	c.134.1.1	99135
2z1qA	577	37.05		
1t4hA	290	39.53	d.144.1.7	106420
1s9jA	341	39.77	d.144.1.7	112049
1ohvA	472	49.60	c.67.1.4	93031
2okuA	131	51.21	a.48.5.1	148809
1euiA	228	55.85	c.18.1.1	31028
1ds6B	180	56.44	b.1.18.8	21898
1b8dA	164	60.20	a.1.1.3	15665
2pi0A	116	60.30	a.4.5.23	149489
2qizA	982	61.63		
3claA	213	64.41	c.43.1.1	32610
1allB	161	70.01	a.1.1.3	15648
1m3vA	122	75.06	g.39.1.3,g.39.1.3	84794,84795
1mq4A	272	75.95	d.144.1.7	91391
1eugA	229	78.08	c.18.1.1	31021
1cqeA	580	88.93	a.93.1.2,g.3.11.1	18703,44246
1x58A	62	89.81	a.4.1.1	121705