# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3f8uA	481	0.8557		
1umpA	631	4.854	a.102.4.2,a.102.4.2	99619,99620
3fsuA	304	7.739		
2hrcA	359	9.085	c.92.1.1	136687
2ijeS	240	10.26		
1gnxA	479	12.85	c.1.8.4	76241
1ogiA	303	13.75	b.43.4.2,c.25.1.1	92914,92915
2avwA	311	15.10		
1hf8A	289	16.60	a.7.8.2,a.118.9.3	90354,90355
3cmcO	334	16.76	c.2.1.3,d.81.1.1	156800,156801
1hkqA	132	17.59	a.4.5.10	83555
1qfjA	232	17.97	b.43.4.2,c.25.1.1	25655,31545
3lvmA	423	18.14		
3fi9A	343	18.67		
3hmhA	155	19.35		
1hrkA	359	19.72	c.92.1.1	61228
2a2fX	325	20.45		
1t3cA	421	21.51	d.92.1.7	106343
3lecA	230	28.07		
2i44A	324	28.11		
1i9gA	280	28.51	c.66.1.13	62090
3gd5A	323	28.68		
2reeA	224	31.46		
3lf7A	634	32.45		
3dhvA	512	33.15		
2dwwA	114	34.27		
1wq3A	322	34.42		
2cf8H	257	34.72		
3hcnA	359	35.98		
2ntxA	365	37.90		
2bmaA	470	39.17		
2fprA	176	39.71	c.108.1.19	133919
3lhoA	267	39.90		
1jlwA	219	40.87	a.45.1.1,c.47.1.5	71741,71742
3l09A	266	41.57		
2nwbA	400	41.75		
1wmdA	434	42.33	b.18.1.20,c.41.1.1	109408,109409
2r8cA	426	43.87	b.92.1.9,c.1.9.18	151698,151699
2j13A	247	45.28	c.6.2.3	137934
3fk4A	414	45.42		
3mleA	242	46.41		
2eplX	627	47.40		
1el5A	389	47.82	c.3.1.2,d.16.1.3	30369,37937
2hbjA	410	47.90	a.60.8.4,c.55.3.5	136311,136312
1y08A	323	48.70	d.3.1.12	116280
1o5hA	214	49.43	a.191.1.1	92497
2j0wA	449	49.93	c.73.1.3,d.58.18.10,d.58.18.10	137923,137924,137925
1gadO	330	50.34	c.2.1.3,d.81.1.1	29950,39865
1wlxA	129	50.39		
3b82A	842	50.46		
3fceA	512	50.51		
1vl1A	232	51.72	c.124.1.1	108707
3lbxA	161	52.00		
1ca1	370	54.55		
3cf6E	694	54.56		
1ypfA	336	56.56		
2on5A	206	57.65		
1sumB	235	58.28	a.7.12.1	106025
2aamA	309	58.46	c.1.8.15	126489
3hhpA	312	58.66		
1x1tA	260	58.77	c.2.1.2	121597
2r3iA	298	59.17		
1wwmA	190	60.65	a.132.1.3	121363
2pa5A	314	61.09		
3h1nA	252	61.45		
2nxbA	123	61.91		
2cmd	312	63.93		
1m4zA	238	65.45	b.34.12.1	78630
1bif	469	66.07		
1wcmD	177	66.33	i.8.1.1	114513
2hldG	278	66.44		
3fstA	304	68.19		
1y9iA	178	68.23	a.195.1.1	116586
2ieaA	886	69.07	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1jz8A	1023	69.97	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
3ikfA	166	72.49		
2p1tA	240	73.03	a.123.1.1	149165
3m0oA	389	73.20		
3iu5A	116	73.28		
2fp4B	395	75.87	c.23.4.1,d.142.1.4	133897,133898
2os5A	119	77.49		
3m5kA	172	79.74		
2ok8A	316	84.60		
3bigA	338	85.21		
3c70A	257	87.07	c.69.1.20	155996