# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hf8A	289	13.84	a.7.8.2,a.118.9.3	90354,90355
1wlxA	129	13.99		
3hmhA	155	17.22		
1qfjA	232	17.97	b.43.4.2,c.25.1.1	25655,31545
2r01A	210	18.19		
3cf6E	694	18.50		
2qv6A	268	19.67		
1i9gA	280	21.61	c.66.1.13	62090
2ax4A	198	22.65		
2bjnA	160	32.98		
1umkA	275	33.23	b.43.4.2,c.25.1.1	113312,113313
2e7uA	424	34.14		
2bmaA	470	36.32		
2a2fX	325	37.95		
1ro7A	259	42.85	c.130.1.1	97667
2hrcA	359	44.52	c.92.1.1	136687
1euzA	419	45.68	c.2.1.7,c.58.1.1	59513,59514
1ca1	370	46.93		
3i94A	248	47.70		
2bw3A	534	50.10	a.270.1.1,c.55.3.12	129317,129318
1t0qA	498	50.28	a.25.1.2	106220
1p3dA	475	55.49	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1lm5A	214	55.52	d.211.2.1	74029
2on5A	206	56.66		
1wcmD	177	59.57	i.8.1.1	114513
3iu5A	116	68.36		
1wwmA	190	69.65	a.132.1.3	121363
2p5yA	311	70.08		
3d0kA	304	71.51		
2nxbA	123	72.57		
8dfrA	189	75.39	c.71.1.1	34895
1kwmA	402	75.89	c.56.5.1,d.58.3.1	73079,73080
1ocsA	162	77.99	d.189.1.1	92776
2ausB	60	78.67		
3d7cA	112	80.47	a.29.2.1	157420
1in0A	163	81.08	d.58.49.1,d.58.49.1	83694,83695
1jboA	162	86.54	a.1.1.3	84150