# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1i9gA	280	10.42	c.66.1.13	62090
2qv6A	268	14.95		
1hf8A	289	16.03	a.7.8.2,a.118.9.3	90354,90355
3cf6E	694	18.23		
1qfjA	232	21.58	b.43.4.2,c.25.1.1	25655,31545
1wlxA	129	23.79		
1euzA	419	25.31	c.2.1.7,c.58.1.1	59513,59514
2r01A	210	25.40		
2ax4A	198	27.23		
2bmaA	470	30.56		
2a2fX	325	31.60		
1t0qA	498	32.52	a.25.1.2	106220
1kwmA	402	33.20	c.56.5.1,d.58.3.1	73079,73080
3i94A	248	33.85		
2p5yA	311	35.17		
1p3dA	475	38.98	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
3hmhA	155	43.18		
3cukA	347	43.29		
1c0pA	363	44.47	c.4.1.2,d.16.1.3	30647,37934
1hkqA	132	49.54	a.4.5.10	83555
2e7uA	424	51.58		
1ocsA	162	52.34	d.189.1.1	92776
2h58A	330	53.45		
1ng4A	390	53.82	c.3.1.2,d.16.1.3	85666,85667
1ca1	370	54.33		
1umkA	275	54.43	b.43.4.2,c.25.1.1	113312,113313
2p1tA	240	58.40	a.123.1.1	149165
3cbgA	232	60.25		
2hrcA	359	60.85	c.92.1.1	136687
2bw3A	534	60.86	a.270.1.1,c.55.3.12	129317,129318
2on5A	206	61.33		
1hfoA	113	66.60	d.80.1.3	61006
2nx9A	464	68.18		
2fm9A	215	69.84	a.257.1.1	133770
2qptA	550	72.30		
1kq6A	141	78.53	d.189.1.1	91020
2okuA	131	80.61	a.48.5.1	148809
2ausB	60	81.41		
2ajtA	500	82.77	b.43.2.2,c.85.1.2	126894,126895
3iu5A	116	83.00		
3lr4A	126	83.26		
2cmd	312	83.67		
1in0A	163	86.68	d.58.49.1,d.58.49.1	83694,83695
1i84S	1184	89.82	i.15.1.1	61940
2os5A	119	89.87