# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lnrA	175	7.945		
2os5A	119	15.18		
1hfoA	113	20.74	d.80.1.3	61006
2dmeA	120	23.30		
2ac2A	309	25.64		
1q2zA	120	27.09	a.118.19.1	95656
2w43A	201	28.94		
1aq0A	306	29.35	c.1.8.3	28842
1hkqA	132	30.51	a.4.5.10	83555
1hf8A	289	31.35	a.7.8.2,a.118.9.3	90354,90355
1uok	558	31.87		
1qx4A	274	32.19	b.43.4.2,c.25.1.1	104624,104625
1rw2A	152	32.63	a.118.19.1	97961
3cf6E	694	35.36		
3eweB	564	35.90		
3a11A	338	38.91		
3gaiA	194	39.39		
1gd0A	122	41.85	d.80.1.3	39834
1xteA	154	42.87	d.189.1.1	116017
2qfjA	216	45.41		
1j5sA	463	47.08	c.1.9.8	71580
3fv9A	386	47.12		
1qddA	144	47.35	d.169.1.1	42324
3evyA	239	47.56		
1x13A	401	50.05		
1v7pA	134	50.06	d.169.1.1	108406
2h1vA	310	52.66		
1p3dA	475	52.71	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1e1hB	174	53.00		
3gajA	187	53.37		
2a7wA	116	53.97	a.204.1.4	126369
3e15A	312	54.03		
1dptA	117	55.60	d.80.1.3	39862
1b5tA	275	55.70	c.1.23.1	29676
2pbfA	227	56.18		
1j3bA	529	56.45	c.91.1.1,c.109.1.1	77071,77072
3k1yA	191	58.72		
3ie2A	431	58.98		
1d2dA	59	59.66	a.16.1.3	16397
3errA	536	60.09		
3ehdA	162	60.70		
3ik4A	365	62.42		
3ijjA	114	63.33		
1m22A	503	64.56	c.117.1.1	78464
3gw4A	203	66.19		
2okuA	131	68.48	a.48.5.1	148809
2dfkA	402	71.27	a.87.1.1,b.55.1.1	145077,145078
1yvwA	115	71.92	a.204.1.4	124122
3iegA	359	74.38		
2a2mA	258	74.56	a.132.1.3	126039
3lbxA	161	74.75		
3enbA	222	76.18	c.55.3.14	158189
1fzcA	87	76.50	h.1.8.1	45590
3ct2A	382	76.71		
3k3qC	175	78.62		
1mhqA	148	79.18	a.118.9.2	84973
1ofdA	1520	81.63	b.80.4.1,c.1.4.1,d.153.1.1	86935,86936,86937
3lr4A	126	81.69		
2fm9A	215	83.12	a.257.1.1	133770
3b64A	112	84.59		
2a5yB	549	85.40	a.4.5.80,a.77.1.3,c.37.1.20	144786,144787,144788
1z8fA	228	86.02		
3goqA	310	86.15		
3djhA	114	86.80		
2a2fX	325	86.92		
1kq6A	141	87.51	d.189.1.1	91020
2rfjA	120	88.71		
2ajtA	500	89.26	b.43.2.2,c.85.1.2	126894,126895
3egwB	509	89.80