# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uok	558	11.69		
1b5tA	275	12.82	c.1.23.1	29676
2w43A	201	14.78		
1yvwA	115	16.26	a.204.1.4	124122
2ac2A	309	16.94		
1hf8A	289	18.26	a.7.8.2,a.118.9.3	90354,90355
2a7wA	116	22.35	a.204.1.4	126369
1x8gA	227	27.28	d.157.1.1	114960
1qx4A	274	27.31	b.43.4.2,c.25.1.1	104624,104625
3d0oA	317	29.67		
2czcA	334	31.06	d.81.1.1,c.2.1.3	131044,145052
3d4pA	317	32.45		
3e15A	312	33.95		
1aq0A	306	35.60	c.1.8.3	28842
1q2zA	120	38.00	a.118.19.1	95656
2os5A	119	41.05		
1dptA	117	41.43	d.80.1.3	39862
2a5yB	549	43.11	a.4.5.80,a.77.1.3,c.37.1.20	144786,144787,144788
1rw2A	152	44.74	a.118.19.1	97961
1j1jA	240	44.85	a.118.16.1	90762
1qddA	144	45.65	d.169.1.1	42324
1d2dA	59	47.75	a.16.1.3	16397
1pt7A	437	52.30	c.123.1.1	95093
2h58A	330	53.66		
1gd0A	122	53.70	d.80.1.3	39834
1e1hB	174	54.74		
2rfjA	120	57.65		
1y89A	238	58.42		
3errA	536	60.78		
1x13A	401	62.04		
2h1vA	310	62.95		
2okuA	131	65.32	a.48.5.1	148809
2ga9A	297	66.21	c.66.1.25	134885
1uozA	315	67.90	c.6.1.1	113354
2dmeA	120	69.26		
2hqvA	195	73.29	e.62.1.2	136674
1hfoA	113	74.53	d.80.1.3	61006
1umkA	275	76.40	b.43.4.2,c.25.1.1	113312,113313
2f3nA	76	76.84	a.60.1.2	132885
3ijjA	114	79.13		
3ehdA	162	80.46		
3iegA	359	82.65		
1xteA	154	84.86	d.189.1.1	116017
1ng4A	390	85.00	c.3.1.2,d.16.1.3	85666,85667
2fm9A	215	86.82	a.257.1.1	133770
3i94A	248	87.31		
1w77A	228	87.73	c.68.1.13	120679