# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b5tA	275	6.406	c.1.23.1	29676
1uok	558	11.56		
1x8gA	227	15.98	d.157.1.1	114960
2w43A	201	18.75		
1hf8A	289	21.85	a.7.8.2,a.118.9.3	90354,90355
1qx4A	274	22.71	b.43.4.2,c.25.1.1	104624,104625
1yvwA	115	23.05	a.204.1.4	124122
2czcA	334	24.11	d.81.1.1,c.2.1.3	131044,145052
2h58A	330	28.27		
2ac2A	309	36.88		
1uozA	315	39.44	c.6.1.1	113354
2a7wA	116	39.70	a.204.1.4	126369
2z2uA	311	40.24		
2rfjA	120	42.29		
1w77A	228	44.95	c.68.1.13	120679
1d2dA	59	45.21	a.16.1.3	16397
1aq0A	306	45.58	c.1.8.3	28842
3d0oA	317	46.51		
3e15A	312	47.35		
1dptA	117	47.67	d.80.1.3	39862
1y89A	238	48.05		
1j1jA	240	48.82	a.118.16.1	90762
1qddA	144	48.95	d.169.1.1	42324
2a5yB	549	51.09	a.4.5.80,a.77.1.3,c.37.1.20	144786,144787,144788
2ga9A	297	51.21	c.66.1.25	134885
3d4pA	317	53.54		
1gd0A	122	57.53	d.80.1.3	39834
1q2zA	120	57.95	a.118.19.1	95656
2os5A	119	63.71		
1umkA	275	63.86	b.43.4.2,c.25.1.1	113312,113313
3i94A	248	67.87		
1u8tA	129	68.37	c.23.1.1	113192
1rw2A	152	68.63	a.118.19.1	97961
1pt7A	437	72.87	c.123.1.1	95093
2g2cA	167	76.51	c.57.1.1	134535
1e1hB	174	79.60		
3cf6E	694	81.04		
1dbiA	280	81.14	c.41.1.1	32543
1x13A	401	81.18		
3iu5A	116	81.21		
2dmeA	120	81.78		
1nowA	507	83.65	c.1.8.6,d.92.2.1	85936,85937
1bgvA	449	86.18	c.2.1.7,c.58.1.1	30217,33865
3ijjA	114	86.78		
2ii0A	490	87.12	a.117.1.1	137425
1hfoA	113	88.44	d.80.1.3	61006