# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rw2A	152	9.201	a.118.19.1	97961
2okuA	131	10.61	a.48.5.1	148809
1u8fO	335	15.27	c.2.1.3,d.81.1.1	119626,119627
2b4rO	345	15.76	c.2.1.3,d.81.1.1	127845,127846
1pjaA	302	16.19	c.69.1.13	94758
2e7jA	371	22.56	c.67.1.9	146704
3cf6E	694	24.81		
3cskA	711	24.91		
1hf8A	289	25.90	a.7.8.2,a.118.9.3	90354,90355
3iukA	562	28.99		
1x13A	401	34.31		
2ah6A	208	35.14		
1q2zA	120	36.24	a.118.19.1	95656
2qagB	427	37.20		
1nu7D	282	38.00	a.8.6.1,a.8.6.1	92191,92192
2owlA	303	38.27		
2f3nA	76	40.05	a.60.1.2	132885
2b25A	336	40.99	c.66.1.13	127699
2ddhA	661	41.54	a.29.3.2,a.29.3.2,e.6.1.2	131394,131395,131396
1mhqA	148	41.94	a.118.9.2	84973
2a2mA	258	42.74	a.132.1.3	126039
1t9hA	307	43.26	b.40.4.5,c.37.1.8	112358,112359
1ad2A	228	43.51	e.24.1.1	43353
2pwyA	258	43.92		
2ef5A	290	47.00		
1aq0A	306	48.06	c.1.8.3	28842
3mtiA	185	49.21		
1e4iA	447	50.28	c.1.8.4	59225
1r1hA	696	50.51	d.92.1.4	104756
1in0A	163	51.22	d.58.49.1,d.58.49.1	83694,83695
2e1mC	181	51.66		
1oa4A	222	53.56	b.29.1.11	86731
1j5sA	463	54.09	c.1.9.8	71580
2rgmA	481	54.94		
1hkqA	132	56.17	a.4.5.10	83555
2g2cA	167	57.04	c.57.1.1	134535
1oa2A	218	57.14	b.29.1.11	86721
2pbfA	227	57.32		
2yxeA	215	58.22		
2a1dD	329	58.89		
2dmeA	120	59.63		
2uz8A	174	60.27		
1h8vA	218	61.40	b.29.1.11	60795
1gnxA	479	67.41	c.1.8.4	76241
1s1hM	132	68.85	i.1.1.1	105165
3mabA	93	69.50		
3e15A	312	70.94		
2yvlA	248	71.32		
1tuwA	109	71.63	d.58.4.8	107346
2fsvA	384	73.45	c.2.1.4,c.23.12.2	134037,134038
3d3yA	425	74.17		
2fa3A	450	75.00		
2gekA	406	78.54		
1wcmD	177	79.15	i.8.1.1	114513
3evyA	239	79.45		
1r4kA	169	81.70	b.34.14.1	96997
2p7jA	287	82.31	d.110.6.2,d.110.6.2	149287,149288
2i6gA	199	83.06	c.66.1.44	137096
2amyA	246	85.86	c.108.1.10	127026
1i9gA	280	87.17	c.66.1.13	62090
1dvpA	220	87.44	a.118.9.2,g.50.1.1	19216,45358