# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ac2A	309	10.28		
1b5tA	275	14.98	c.1.23.1	29676
1hf8A	289	16.53	a.7.8.2,a.118.9.3	90354,90355
2w43A	201	16.82		
2czcA	334	27.28	d.81.1.1,c.2.1.3	131044,145052
1q2zA	120	28.39	a.118.19.1	95656
1rw2A	152	31.10	a.118.19.1	97961
2os5A	119	31.36		
1uok	558	31.51		
2rfjA	120	35.36		
3e15A	312	40.23		
3lnrA	175	43.23		
3cf6E	694	48.80		
2h1vA	310	49.42		
1aq0A	306	49.79	c.1.8.3	28842
1gd0A	122	50.15	d.80.1.3	39834
1qx4A	274	51.08	b.43.4.2,c.25.1.1	104624,104625
1hfoA	113	54.63	d.80.1.3	61006
1nowA	507	55.38	c.1.8.6,d.92.2.1	85936,85937
2f3nA	76	56.32	a.60.1.2	132885
3i94A	248	56.62		
2a7wA	116	60.19	a.204.1.4	126369
3iegA	359	63.02		
3goqA	310	63.42		
2a5yB	549	63.81	a.4.5.80,a.77.1.3,c.37.1.20	144786,144787,144788
1w77A	228	64.20	c.68.1.13	120679
3lbxA	161	65.75		
2fm9A	215	65.81	a.257.1.1	133770
3mb3A	135	66.09		
1yvwA	115	66.66	a.204.1.4	124122
3ijjA	114	71.69		
1dptA	117	73.03	d.80.1.3	39862
1uozA	315	73.28	c.6.1.1	113354
2g2cA	167	73.91	c.57.1.1	134535
1x13A	401	75.90		
1wmdA	434	76.66	b.18.1.20,c.41.1.1	109408,109409
2okuA	131	78.14	a.48.5.1	148809
3gaiA	194	78.61		
1x8gA	227	79.85	d.157.1.1	114960
3gajA	187	81.03		
1svfB	38	81.11	h.3.2.1	45764
2ac4A	309	81.35		
1d2dA	59	89.30	a.16.1.3	16397