# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ac2A	309	6.856		
1b5tA	275	8.195	c.1.23.1	29676
2czcA	334	14.66	d.81.1.1,c.2.1.3	131044,145052
1hf8A	289	18.72	a.7.8.2,a.118.9.3	90354,90355
1q2zA	120	21.75	a.118.19.1	95656
1qx4A	274	25.65	b.43.4.2,c.25.1.1	104624,104625
1rw2A	152	31.47	a.118.19.1	97961
2h1vA	310	32.10		
3e15A	312	33.04		
2w43A	201	34.02		
3goqA	310	35.41		
1uok	558	36.62		
1nowA	507	38.94	c.1.8.6,d.92.2.1	85936,85937
1aq0A	306	41.24	c.1.8.3	28842
2rfjA	120	45.29		
2os5A	119	49.98		
1w77A	228	53.85	c.68.1.13	120679
1wmdA	434	57.65	b.18.1.20,c.41.1.1	109408,109409
1gd0A	122	57.83	d.80.1.3	39834
1yvwA	115	58.02	a.204.1.4	124122
1u9yA	284	60.86	c.61.1.2,c.61.1.2	119655,119656
3mb3A	135	63.88		
1bgvA	449	65.92	c.2.1.7,c.58.1.1	30217,33865
3lbxA	161	66.42		
2ac4A	309	66.97		
1uozA	315	68.64	c.6.1.1	113354
2a7wA	116	69.98	a.204.1.4	126369
1hfoA	113	70.57	d.80.1.3	61006
2a5yB	549	72.94	a.4.5.80,a.77.1.3,c.37.1.20	144786,144787,144788
1u8tA	129	74.48	c.23.1.1	113192
1e1hB	174	77.65		
1x13A	401	79.74		
2g2cA	167	81.06	c.57.1.1	134535
2f3nA	76	82.45	a.60.1.2	132885
2okuA	131	83.80	a.48.5.1	148809
3cf6E	694	84.58		
3evyA	239	84.89		
2iy9A	347	85.29		
1d2dA	59	86.86	a.16.1.3	16397
1dptA	117	87.71	d.80.1.3	39862
1dbiA	280	88.62	c.41.1.1	32543
3lnrA	175	88.86