# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oa2A	218	5.346	b.29.1.11	86721
1h8vA	218	5.480	b.29.1.11	60795
2nlrA	234	5.682	b.29.1.11	24344
1oa4A	222	8.263	b.29.1.11	86731
1gnxA	479	11.84	c.1.8.4	76241
2rgmA	481	15.64		
2okuA	131	16.90	a.48.5.1	148809
1q5nA	454	18.11	a.127.1.1	95901
1e4iA	447	20.42	c.1.8.4	59225
3hvnA	508	21.07		
1rw2A	152	24.34	a.118.19.1	97961
3htnA	149	25.66		
2ef5A	290	27.05		
2b4rO	345	30.86	c.2.1.3,d.81.1.1	127845,127846
1t9hA	307	31.46	b.40.4.5,c.37.1.8	112358,112359
1olrA	224	32.64	b.29.1.11	93330
3d2fA	675	36.42		
2qagB	427	37.89		
1mhqA	148	40.03	a.118.9.2	84973
1h0bA	256	40.53	b.29.1.11	83422
1bowA	159	42.49	d.60.1.1	39528
1r1hA	696	45.56	d.92.1.4	104756
3h2gA	397	46.93		
3d85C	178	47.87		
1ad2A	228	54.82	e.24.1.1	43353
1tffA	234	57.18	d.3.1.11	106854
1u8fO	335	57.32	c.2.1.3,d.81.1.1	119626,119627
2hhjA	267	57.65	c.60.1.1	136497
2pbfA	227	59.03		
1qddA	144	59.82	d.169.1.1	42324
3lxwA	247	60.18		
1pjaA	302	61.28	c.69.1.13	94758
1iz6A	138	63.22	b.34.5.2,b.40.4.5	76976,76977
2e1mC	181	64.78		
2yvlA	248	66.74		
2z2uA	311	66.90		
3egiA	206	67.75		
1lbaA	146	72.70	d.118.1.1	41062
1ypfA	336	72.96		
3iukA	562	73.02		
3lgbA	194	76.11		
2di4A	238	82.15	a.269.1.1	131522
2fcoA	200	82.15