# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qptA	550	8.677		
2iakA	224	11.06		
1hf8A	289	13.76	a.7.8.2,a.118.9.3	90354,90355
1rw2A	152	14.30	a.118.19.1	97961
2okuA	131	14.71	a.48.5.1	148809
2ac2A	309	15.67		
1tuwA	109	16.43	d.58.4.8	107346
1ad2A	228	16.90	e.24.1.1	43353
2b4rO	345	22.46	c.2.1.3,d.81.1.1	127845,127846
1q2zA	120	25.80	a.118.19.1	95656
3e70C	328	27.83		
3d2fA	675	28.08		
2a2mA	258	29.11	a.132.1.3	126039
3ifvA	247	31.76		
1mhqA	148	32.92	a.118.9.2	84973
1pjaA	302	33.98	c.69.1.13	94758
3jszA	525	42.03		
2os5A	119	43.88		
1o3uA	135	43.97	a.24.16.3	86615
2e1mC	181	44.72		
2ddhA	661	45.89	a.29.3.2,a.29.3.2,e.6.1.2	131394,131395,131396
1gd0A	122	49.69	d.80.1.3	39834
3e15A	312	51.12		
2z2uA	311	51.45		
1mngA	203	52.86	a.2.11.1,d.44.1.1	15776,38701
3fp5A	106	54.24		
1k8tA	510	55.07	e.41.1.1	68316
3cnbA	143	55.30		
2fcwA	109	56.62	a.13.1.1	133288
2cb5A	453	57.52	d.3.1.1	37035
1u8fO	335	58.93	c.2.1.3,d.81.1.1	119626,119627
1r1hA	696	61.80	d.92.1.4	104756
2rgmA	481	61.90		
2bjnA	160	63.04		
3lr4A	126	66.83		
2as0A	396	71.02	b.122.1.9,c.66.1.51	127227,127228
2h1vA	310	71.71		
3ijjA	114	75.33		
3eb8A	358	76.55		
1dptA	117	78.58	d.80.1.3	39862
1q5nA	454	79.22	a.127.1.1	95901
3h2yA	368	79.26		
1hfoA	113	79.34	d.80.1.3	61006
3goqA	310	80.14		
2h58A	330	81.04		
1sxjC	340	81.56	a.80.1.1,c.37.1.20	106085,106086
2wvvA	450	81.68		
3cf6E	694	83.76		
3lnrA	175	83.89		
2dmeA	120	84.48		
2czcA	334	86.00	d.81.1.1,c.2.1.3	131044,145052
1byi	224	88.01		
1w77A	228	88.23	c.68.1.13	120679
2b43A	526	88.43