# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3dzvA	273	0.5288		
1mwvA	714	1.265	a.93.1.3,a.93.1.3	85161,85162
3n3rA	748	2.800		
3abbA	408	6.889		
2gpyA	233	8.515		
2hyvA	308	11.21		
1dm5A	315	11.91	a.65.1.1	18186
1w7bA	339	12.40	a.65.1.1	114317
1fa0A	537	13.21	d.58.16.1,a.160.1.1,d.218.1.3	39335,75837,75838
1ah7A	245	23.20	a.124.1.1	19339
1hm6A	346	24.96	a.65.1.1	18147
1nv8A	284	27.13	c.66.1.30	86224
2wi9A	436	27.28		
3abaA	403	28.69		
1a0dA	440	30.69	c.1.15.3	29533
1a0cA	438	30.71	c.1.15.3	29529
2afbA	351	31.11	c.72.1.1	126674
2yvlA	248	33.01		
1knvA	293	37.77	c.52.1.7	68707
2ajtA	500	40.15	b.43.2.2,c.85.1.2	126894,126895
1axn	323	40.87		
1axnA	323	41.25	a.65.1.1	18149
3k7lA	422	44.22		
3c0qA	301	45.08		
2pmkA	243	45.57	c.37.1.12	149669
2hc5A	117	45.63	d.352.1.1	147255
1x38A	602	47.90	c.1.8.7,c.23.11.1	121655,121656
2hhpA	530	49.83	a.160.1.1,d.218.1.3,d.58.16.1	136503,136504,136505
2ff7A	247	52.87	c.37.1.12	133377
1fsz	372	53.74		
3mzoA	216	54.27		
1q20A	299	57.26	c.37.1.5	95616
2b0mA	393	58.57	c.1.4.1	127644
2c3nA	247	59.90		
3kp1E	121	60.71		
1lfkA	398	62.64	a.104.1.1	77926
2cd8A	436	65.63		
1yhtA	367	66.41	c.1.8.6	123213
2d5rA	252	68.11	c.55.3.9	146466
1o0wA	252	69.77	a.149.1.1,d.50.1.1	80751,80752
3evyA	239	70.57		
1yumA	242	70.59		
2uuqA	414	70.76		
2wglA	254	70.89		
3duwA	223	71.77		
2c43A	323	72.73		
1n40A	396	74.11	a.104.1.1	79977
2wvmA	391	74.43		
3hpdA	265	74.56		
2nugA	221	76.95	a.149.1.1,d.50.1.1	148452,148453
1jsxA	207	77.54	c.66.1.20	71846
2d09A	407	78.39		
3xis	387	78.77		
3dp7A	363	78.78		
1ituA	369	78.87	c.1.9.7	71423
2vgbA	528	78.98		
1cptA	428	79.11	a.104.1.1	18968
2j6vA	301	79.36		
2d0eA	407	80.75		
1uedA	406	80.83	a.104.1.1	99256
2i6gA	199	81.35	c.66.1.44	137096
1q0sA	259	82.02	c.66.1.28	95509
3mbjA	291	82.48		
2hnkA	239	84.33		
1esjA	284	84.96	c.72.1.2	34943
1ex1A	605	85.02	c.1.8.7,c.23.11.1	29013,31347
2ie7A	318	85.89	a.65.1.1	137293
3bbyA	215	86.00		
3ejbB	404	87.53