# List of top-scoring protein chains for t2k-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2uytA 489 1.38e+00 1h6gA 256 1.85e+00 1h6gA a.24.9.1,a.24.9.1 60669,60670 3k9vA 482 2.14e+00 3kezA 461 4.08e+00 1s2xA 206 4.37e+00 a.47.3.1 105229 1gv3A 248 5.50e+00 a.2.11.1,d.44.1.1 70585,70586 2gm6A 208 6.55e+00 b.82.1.19 147130 2dpmA 284 7.27e+00 2dpmA c.66.1.28 34246 2gpcA 194 7.40e+00 2eb1A 200 7.57e+00 2p3nA 256 7.84e+00 2kuaA 170 8.90e+00 3c4bA 265 1.02e+01 1u2xA 474 1.08e+01 c.72.1.3 107622 3d36A 244 1.17e+01 1hwxA 501 1.26e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 3e2cA 158 1.27e+01 3etdA 501 1.32e+01 2ki4B 98 1.33e+01 2ow6A 1045 1.43e+01 a.8.3.1,b.30.5.6,c.6.2.1 149039,149040,149041 3bvxA 1045 1.43e+01 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 2vxiA 158 1.44e+01 3mw9A 501 1.49e+01 1htyA 1015 1.72e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2ez6A 221 1.73e+01 a.149.1.1,d.50.1.1 132616,132617 1qwnA 1045 1.74e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1gm5A 780 1.83e+01 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 3cq0A 339 1.86e+01 1n4qB 377 1.90e+01 a.102.4.3 91636 1jfzA 154 2.01e+01 a.149.1.1 66655 3hj1A 387 2.01e+01 2dp3A 257 2.07e+01 1fcyA 236 2.08e+01 2lbd a.123.1.1 19282 1ymgA 263 2.09e+01 f.19.1.1 145918 2pvqA 201 2.16e+01 2ntoA 201 2.18e+01 2c6cA 707 2.19e+01 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2ja2A 498 2.23e+01 2k2vA 126 2.24e+01 3hj4A 384 2.25e+01 2pm7A 399 2.31e+01 1izmA 184 2.35e+01 a.199.1.1 90725 3kofA 337 2.41e+01 2yzsA 315 2.42e+01 3enbA 222 2.43e+01 c.55.3.14 158189 2p0pA 126 2.44e+01 1i0hA 205 2.45e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 1xnfA 275 2.46e+01 a.118.8.1 115580 3e1qA 158 2.47e+01 3drwA 474 2.47e+01 3cwnA 337 2.55e+01 3fxhA 135 2.56e+01 2z51A 154 2.56e+01 2nugA 221 2.60e+01 a.149.1.1,d.50.1.1 148452,148453 1d5nA 205 2.66e+01 1avmA a.2.11.1,d.44.1.1 15762,38687 1onrA 316 2.73e+01 1onrA c.1.10.1 29169 2lbd 267 2.74e+01 2lbd 2qjfA 405 2.74e+01 2egdA 98 2.77e+01 1i4sA 147 2.81e+01 a.149.1.1 66026 1hwyA 501 2.85e+01 1hwyA c.2.1.7,c.58.1.1 30262,33910 1jd1A 129 2.86e+01 1qu9A d.79.1.1 62890 3hy0A 441 2.89e+01 1nv8A 284 2.89e+01 c.66.1.30 86224 3dbyA 269 2.93e+01 a.29.13.1,a.29.13.1 157486,157487 2h2kA 106 2.97e+01 2ootA 709 2.98e+01 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 3jslA 318 3.01e+01 1jmoA 480 3.02e+01 e.1.1.1 77138 2or4A 709 3.09e+01 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 3f3fC 570 3.12e+01 3cxbA 336 3.18e+01 1v0wA 506 3.23e+01 d.136.1.2,d.136.1.2 108220,108221 2zumA 458 3.27e+01 1z47A 355 3.28e+01 2zu0C 267 3.31e+01 1zymA 258 3.32e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 2qtfA 364 3.32e+01 1e4cP 215 3.32e+01 2fua c.74.1.1 34969 1j8mF 297 3.33e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1yj8A 375 3.35e+01 1j8yF 297 3.35e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1w33A 181 3.39e+01 1bcfA 158 3.45e+01 1bcfA a.25.1.1 16648 3bhxA 709 3.49e+01 a.48.2.1,c.8.4.1,c.56.5.5 155289,155290,155291 3dcfA 218 3.49e+01 1vcsA 102 3.53e+01 a.47.2.1 119985 3kraB 274 3.54e+01 1ztsA 139 3.69e+01 3bi1A 709 3.70e+01 a.48.2.1,c.8.4.1,c.56.5.5 155295,155296,155297 1z6gA 218 3.75e+01 1c4oA 664 3.85e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 2fwtA 125 3.93e+01 3l1bA 233 3.95e+01 2ar0A 541 3.96e+01 c.66.1.45 127185 3cqvA 199 4.01e+01 1ut8A 291 4.08e+01 a.60.7.1,c.120.1.2 99908,99909 2rccA 346 4.14e+01 2qw5A 335 4.15e+01 1lis 136 4.18e+01 1lis 2lisA 136 4.18e+01 1lis a.19.1.1 16405 3evyA 239 4.23e+01 2jdiA 510 4.27e+01 a.69.1.1,b.49.1.1,c.37.1.11 145683,145684,145685 1d2vC 466 4.30e+01 1mhlC 2ch5A 347 4.36e+01 c.55.1.5,c.55.1.5 130453,130454 1p7gA 222 4.39e+01 a.2.11.1,d.44.1.1 94223,94224 3f9pC 467 4.48e+01 2qfiA 300 4.51e+01 d.52.9.1,f.59.1.1 150734,150735 1f0iA 504 4.64e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 2ixnA 310 4.64e+01 a.268.1.1 137777 1ypfA 336 4.68e+01 1svfB 38 4.70e+01 1svfB h.3.2.1 45764 1k99A 99 4.73e+01 a.21.1.1 68341 1dc1A 323 4.74e+01 1dc1A c.52.1.11 33321 1wy1A 172 4.82e+01 3buxB 329 4.84e+01 a.39.1.7,a.48.1.1,d.93.1.1 155647,155648,155649 3i6aA 222 4.87e+01 1di1A 300 4.91e+01 1di1A a.128.1.4 19446 1m4uA 206 4.94e+01 g.17.1.7 78625 1ewqA 765 4.95e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2r31A 239 4.96e+01 d.381.1.1 151546 2bc4B 211 4.97e+01 1xn8A 131 4.99e+01 a.229.1.1 115577 3js4A 227 5.06e+01 1fr2A 86 5.07e+01 a.28.2.1 83256 2pbxA 203 5.18e+01 1p2xA 159 5.20e+01 a.40.1.1 104062 3c7lA 137 5.22e+01 3hdfA 140 5.35e+01 1xsjA 778 5.47e+01 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1vrmA 325 5.48e+01 d.96.2.1 120472 3fh3A 158 5.49e+01 1jliA 112 5.52e+01 a.26.1.2 16884 2r40D 266 5.54e+01 a.123.1.1 151572 3ehmA 532 5.59e+01 1ix9A 205 5.63e+01 a.2.11.1,d.44.1.1 76899,76900 2rekA 199 5.64e+01 2cruA 118 5.75e+01 a.5.6.1 130742 2affB 44 5.80e+01 2hvgA 482 5.83e+01 2nsaA 170 5.90e+01 1i2oA 316 5.91e+01 1onrA c.1.10.1 61574 1p5sA 203 5.91e+01 a.40.1.1 94147 2e01A 457 5.98e+01 1ej6B 1275 5.98e+01 i.7.1.1 45968 3dwbA 670 5.99e+01 2btvA 901 6.05e+01 2btvA e.28.1.1 43376 2on5A 206 6.09e+01 2qvwA 756 6.10e+01 2q8gA 407 6.17e+01 1w63A 618 6.23e+01 i.23.1.1 109192 2g7oA 70 6.25e+01 a.241.1.1 134736 1wa5C 960 6.27e+01 a.118.1.1 114433 2p54A 267 6.33e+01 a.123.1.1 139497 2yukA 90 6.40e+01 1kb0A 677 6.47e+01 a.3.1.6,b.70.1.1 68378,68379 1fvnA 37 6.53e+01 1fvnA j.6.1.1 46096 1yvhA 329 6.56e+01 a.39.1.7,a.48.1.1,d.93.1.1 124096,124097,124098 1j7xA 302 6.60e+01 c.14.1.2 66425 2nr5A 67 6.66e+01 a.25.6.1 148349 2f2hA 773 6.68e+01 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 3mb4A 124 6.71e+01 2qubA 615 6.73e+01 1vplA 256 6.77e+01 c.37.1.12 113966 1scfA 273 6.80e+01 1exzA a.26.1.2 16873 2g8lA 299 6.87e+01 e.50.1.1 134775 1d2mA 665 6.88e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1f8pA 37 6.99e+01 1f8pA j.6.1.1 46091 2b7uA 257 7.03e+01 1sceA 112 7.08e+01 1puc d.97.1.1 40676 2de0X 526 7.14e+01 2b7aA 293 7.17e+01 2ccmA 191 7.19e+01 2e8gA 241 7.21e+01 1gseA 221 7.25e+01 1pgtA a.45.1.1,c.47.1.5 17667,32961 1mhlC 466 7.44e+01 1mhlC 3m9iA 220 7.48e+01 3eciA 122 7.50e+01 2rioA 434 7.53e+01 1p5zB 263 7.56e+01 c.37.1.1 87815 1gcb 454 7.57e+01 3gcb 3maxA 367 7.57e+01 3n4eA 393 7.61e+01 2q6fA 309 7.63e+01 3gd2A 229 7.68e+01 3dx5A 286 7.69e+01 2cwlA 302 7.71e+01 a.25.1.3 130927 2npsD 82 7.73e+01 3e64A 293 7.74e+01 1lrv 244 7.76e+01 1lrv 1lrvA 244 7.76e+01 a.118.1.5 19146 1sf8A 126 7.79e+01 d.271.1.1 105472 1xuqA 212 7.85e+01 2o4uX 334 7.92e+01 1i7gA 287 7.92e+01 a.123.1.1 71121 1idsA 207 7.99e+01 1avmA a.2.11.1,d.44.1.1 15722,38730