# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2uytA 489 1.29e+00 3kezA 461 5.14e+00 1h6gA 256 5.43e+00 1h6gA a.24.9.1,a.24.9.1 60669,60670 3k9vA 482 8.20e+00 2kuaA 170 9.62e+00 3cwnA 337 1.05e+01 2vzfA 197 1.09e+01 3kofA 337 1.17e+01 1onrA 316 1.17e+01 1onrA c.1.10.1 29169 3e2cA 158 1.25e+01 2p3nA 256 1.32e+01 1s2xA 206 1.39e+01 a.47.3.1 105229 2vxiA 158 1.62e+01 3cq0A 339 1.88e+01 2ch5A 347 2.08e+01 c.55.1.5,c.55.1.5 130453,130454 3fxhA 135 2.25e+01 2z51A 154 2.26e+01 3e1qA 158 2.26e+01 3drwA 474 2.29e+01 2v0vA 194 2.32e+01 1vj7A 393 2.34e+01 a.211.1.1,d.218.1.8 100801,100802 1i2oA 316 2.43e+01 1onrA c.1.10.1 61574 3a8tA 339 2.66e+01 3d36A 244 2.71e+01 1u2xA 474 2.75e+01 c.72.1.3 107622 1vb5A 276 2.76e+01 c.124.1.5 113604 3ehmA 532 2.88e+01 2cwlA 302 2.91e+01 a.25.1.3 130927 2qtfA 364 2.96e+01 1xn8A 131 3.00e+01 a.229.1.1 115577 1dc1A 323 3.03e+01 1dc1A c.52.1.11 33321 1i0aA 466 3.03e+01 1auwA a.127.1.1 61479 2ki4B 98 3.06e+01 1ro7A 259 3.18e+01 c.130.1.1 97667 1xnfA 275 3.23e+01 a.118.8.1 115580 2wvlA 391 3.23e+01 1izmA 184 3.30e+01 a.199.1.1 90725 3gcb 470 3.60e+01 3gcb 3gcbA 470 3.60e+01 d.3.1.1 37032 1bcfA 158 3.60e+01 1bcfA a.25.1.1 16648 2v8tA 302 3.60e+01 2e01A 457 3.71e+01 2gm6A 208 3.86e+01 b.82.1.19 147130 3hy0A 441 3.88e+01 1v7mV 163 3.91e+01 a.26.1.2 100458 2r31A 239 3.93e+01 d.381.1.1 151546 1gcb 454 3.95e+01 3gcb 3a9sA 595 3.98e+01 2dpmA 284 4.03e+01 2dpmA c.66.1.28 34246 1fcyA 236 4.16e+01 2lbd a.123.1.1 19282 1ymgA 263 4.17e+01 f.19.1.1 145918 1g5aA 628 4.42e+01 b.71.1.1,c.1.8.1 65152,65153 1v0wA 506 4.61e+01 d.136.1.2,d.136.1.2 108220,108221 1f0iA 504 4.61e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1ztsA 139 4.69e+01 3js4A 227 4.70e+01 1n4aA 252 4.74e+01 c.92.2.2 85317 1m4uA 206 4.88e+01 g.17.1.7 78625 2p54A 267 4.94e+01 a.123.1.1 139497 1hrdA 449 4.97e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 2b7uA 257 5.00e+01 2zumA 458 5.05e+01 3f9pC 467 5.08e+01 1n2zA 245 5.11e+01 c.92.2.2 79865 2cruA 118 5.24e+01 a.5.6.1 130742 1d2vC 466 5.30e+01 1mhlC 1gm5A 780 5.31e+01 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1r6uA 437 5.48e+01 c.26.1.1 97163 2pvqA 201 5.49e+01 1w63A 618 5.58e+01 i.23.1.1 109192 1yovA 537 5.60e+01 c.111.1.2 123785 1e4cP 215 5.60e+01 2fua c.74.1.1 34969 2qeeA 437 5.73e+01 2jdiA 510 5.80e+01 a.69.1.1,b.49.1.1,c.37.1.11 145683,145684,145685 1auwA 468 5.83e+01 1auwA a.127.1.1 19416 1ypfA 336 5.88e+01 1gv3A 248 5.90e+01 a.2.11.1,d.44.1.1 70585,70586 2ntoA 201 5.92e+01 2qw5A 335 5.98e+01 2czqA 205 6.06e+01 2zu0C 267 6.31e+01 1mhlC 466 6.37e+01 1mhlC 2pnkA 428 6.38e+01 c.1.9.8 149674 3cqvA 199 6.42e+01 2hvgA 482 6.51e+01 1yj8A 375 6.52e+01 2qgaB 465 6.66e+01 2c6cA 707 6.76e+01 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2id6A 202 6.76e+01 a.4.1.9,a.121.1.1 147624,147625 3kt0A 438 6.77e+01 2npsD 82 6.78e+01 2qjfA 405 6.82e+01 1xsjA 778 6.82e+01 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2wvmA 391 6.88e+01 2egdA 98 6.94e+01 1tezA 474 7.05e+01 a.99.1.1,c.28.1.1 112409,112410 1vplA 256 7.18e+01 c.37.1.12 113966 2nsaA 170 7.21e+01 2pm7A 399 7.26e+01 1neyA 247 7.29e+01 c.1.1.1 80449 2yukA 90 7.30e+01 1qnf 484 7.34e+01 1qnf 1v7nV 163 7.51e+01 a.26.1.2 100476 2qvwA 756 7.55e+01 1z6gA 218 7.63e+01 3mw9A 501 7.68e+01 1q0sA 259 7.72e+01 c.66.1.28 95509 1vjvA 415 7.83e+01 d.3.1.9 108632 1zkgA 212 7.83e+01 a.4.1.9,a.121.1.1 125194,125195 2x1gF 971 7.84e+01 2lbd 267 7.99e+01 2lbd 2e8gA 241 7.99e+01