# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2uytA 489 8.02e-01 3kezA 461 1.14e+00 1h6gA 256 1.50e+00 1h6gA a.24.9.1,a.24.9.1 60669,60670 1u2xA 474 2.17e+00 c.72.1.3 107622 2p3nA 256 2.90e+00 3fxhA 135 4.11e+00 2jdiA 510 4.30e+00 a.69.1.1,b.49.1.1,c.37.1.11 145683,145684,145685 2dpmA 284 4.43e+00 2dpmA c.66.1.28 34246 1s2xA 206 5.32e+00 a.47.3.1 105229 3drwA 474 5.92e+00 2qjfA 405 6.11e+00 1izmA 184 6.87e+00 a.199.1.1 90725 3etdA 501 6.87e+00 2kuaA 170 7.42e+00 2k2vA 126 8.17e+00 3d36A 244 8.44e+00 1hwxA 501 8.91e+00 1hwyA c.2.1.7,c.58.1.1 30250,33898 1v0wA 506 9.79e+00 d.136.1.2,d.136.1.2 108220,108221 3hj4A 384 9.83e+00 2eb1A 200 9.96e+00 3mw9A 501 1.03e+01 2p0pA 126 1.04e+01 2z51A 154 1.05e+01 1fcyA 236 1.05e+01 2lbd a.123.1.1 19282 1f0iA 504 1.07e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 3hj1A 387 1.09e+01 2wvlA 391 1.16e+01 1q0sA 259 1.18e+01 c.66.1.28 95509 3dcfA 218 1.21e+01 3enbA 222 1.24e+01 c.55.3.14 158189 2gm6A 208 1.25e+01 b.82.1.19 147130 2pm7A 399 1.28e+01 1z47A 355 1.32e+01 2lbd 267 1.50e+01 2lbd 1gm5A 780 1.52e+01 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1jmoA 480 1.53e+01 e.1.1.1 77138 1ztsA 139 1.55e+01 1yf3A 259 1.59e+01 c.66.1.28 123046 2fwtA 125 1.61e+01 1gv3A 248 1.68e+01 a.2.11.1,d.44.1.1 70585,70586 2zu0C 267 1.70e+01 2gpcA 194 1.73e+01 3cq0A 339 1.80e+01 1xn8A 131 1.84e+01 a.229.1.1 115577 1e69B 322 1.84e+01 1e69B c.37.1.12 32377 1e4cP 215 2.00e+01 2fua c.74.1.1 34969 2rccA 346 2.03e+01 1w33A 181 2.05e+01 3hy0A 441 2.09e+01 2e01A 457 2.13e+01 3jslA 318 2.14e+01 2ja2A 498 2.18e+01 1p2xA 159 2.22e+01 a.40.1.1 104062 2ixnA 310 2.25e+01 a.268.1.1 137777 1ro7A 259 2.25e+01 c.130.1.1 97667 2zumA 458 2.32e+01 1h8eA 510 2.34e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2b7uA 257 2.34e+01 1hwyA 501 2.35e+01 1hwyA c.2.1.7,c.58.1.1 30262,33910 3kofA 337 2.36e+01 2npsD 82 2.36e+01 2dqwA 294 2.39e+01 1m4uA 206 2.44e+01 g.17.1.7 78625 2ki4B 98 2.47e+01 3cqvA 199 2.49e+01 2affB 44 2.55e+01 2dhzA 120 2.57e+01 3cwnA 337 2.59e+01 3f9pC 467 2.59e+01 1d2vC 466 2.62e+01 1mhlC 2c6cA 707 2.64e+01 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 1nv8A 284 2.68e+01 c.66.1.30 86224 3gcb 470 2.69e+01 3gcb 3gcbA 470 2.69e+01 d.3.1.1 37032 1p7gA 222 2.72e+01 a.2.11.1,d.44.1.1 94223,94224 3evyA 239 2.72e+01 1gcb 454 2.73e+01 3gcb 3c4bA 265 2.76e+01 3ehmA 532 2.78e+01 2akzA 439 2.78e+01 c.1.11.1,d.54.1.1 126944,126945 2gs8A 317 2.86e+01 1j7xA 302 2.87e+01 c.14.1.2 66425 1t4bA 367 2.89e+01 c.2.1.3,d.81.1.1 106406,106407 2wxfA 940 2.91e+01 1onrA 316 2.99e+01 1onrA c.1.10.1 29169 3eciA 122 3.00e+01 1rlw 126 3.05e+01 1rlw 1rlwA 126 3.05e+01 b.7.1.1 23177 2cruA 118 3.09e+01 a.5.6.1 130742 1vb5A 276 3.20e+01 c.124.1.5 113604 1yj8A 375 3.27e+01 3dsdA 349 3.28e+01 2qvwA 756 3.29e+01 1w63A 618 3.30e+01 i.23.1.1 109192 2rekA 199 3.31e+01 2v94A 107 3.33e+01 d.12.1.3 152795 3bhwA 209 3.38e+01 1p5sA 203 3.38e+01 a.40.1.1 94147 3k9vA 482 3.42e+01 1z6gA 218 3.44e+01 2f2hA 773 3.55e+01 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1brmA 367 3.55e+01 1brmA c.2.1.3,d.81.1.1 30030,39945 2cbzA 237 3.60e+01 3a9sA 595 3.62e+01 3f0nA 414 3.62e+01 2wvmA 391 3.62e+01 2or4A 709 3.64e+01 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2ootA 709 3.65e+01 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2ntoA 201 3.65e+01 3buxB 329 3.66e+01 a.39.1.7,a.48.1.1,d.93.1.1 155647,155648,155649 2yzsA 315 3.77e+01 2czqA 205 3.78e+01 1jd1A 129 3.79e+01 1qu9A d.79.1.1 62890 1x9nA 688 3.86e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1ii7A 333 3.91e+01 1ii7A d.159.1.4 62415 2on5A 206 3.98e+01 2nr5A 67 3.98e+01 a.25.6.1 148349 2dp3A 257 4.00e+01 3caxA 369 4.03e+01 3mcxA 477 4.06e+01 3dscA 349 4.15e+01 d.159.1.4 157840 2qubA 615 4.19e+01 1i45A 248 4.27e+01 1amk c.1.1.1 61665 1ut8A 291 4.27e+01 a.60.7.1,c.120.1.2 99908,99909 3h4gA 325 4.33e+01 2g3mA 693 4.33e+01 1vplA 256 4.34e+01 c.37.1.12 113966 1n4qB 377 4.36e+01 a.102.4.3 91636 3bhxA 709 4.38e+01 a.48.2.1,c.8.4.1,c.56.5.5 155289,155290,155291 1lis 136 4.41e+01 1lis 2lisA 136 4.41e+01 1lis a.19.1.1 16405 1j8mF 297 4.43e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 3iopA 312 4.43e+01 1mhlC 466 4.48e+01 1mhlC 2pvqA 201 4.56e+01 3bi1A 709 4.56e+01 a.48.2.1,c.8.4.1,c.56.5.5 155295,155296,155297 1oxsC 353 4.60e+01 b.40.6.3,c.37.1.12 87519,87520 1ay7B 89 4.62e+01 1ay7B c.9.1.1 30836 2bwnA 401 4.63e+01 c.67.1.4 129368 3fvqA 359 4.66e+01 2z8zA 617 4.68e+01 1j8yF 297 4.70e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1ymgA 263 4.71e+01 f.19.1.1 145918 2z8xA 617 4.72e+01 2or0A 414 4.73e+01 3c7lA 137 4.73e+01 3f3fC 570 4.82e+01 3e2cA 158 4.89e+01 1kb0A 677 4.93e+01 a.3.1.6,b.70.1.1 68378,68379 3ktbA 106 4.96e+01 2ovlA 371 5.12e+01 1xsjA 778 5.17e+01 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2zu9A 394 5.22e+01 3jysA 499 5.26e+01 1cy9A 264 5.32e+01 1ecl e.10.1.1 43236 1vcsA 102 5.35e+01 a.47.2.1 119985 2p54A 267 5.36e+01 a.123.1.1 139497 2wcrA 159 5.42e+01 2himA 358 5.48e+01 1wy1A 172 5.52e+01 1fr2A 86 5.53e+01 a.28.2.1 83256 3bvxA 1045 5.54e+01 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 3h9oA 311 5.55e+01 2ow6A 1045 5.55e+01 a.8.3.1,b.30.5.6,c.6.2.1 149039,149040,149041 1jliA 112 5.56e+01 a.26.1.2 16884 3lppA 898 5.60e+01 1dc1A 323 5.64e+01 1dc1A c.52.1.11 33321 1fvnA 37 5.65e+01 1fvnA j.6.1.1 46096 3dbyA 269 5.65e+01 a.29.13.1,a.29.13.1 157486,157487 2cb5A 453 5.66e+01 3gcb d.3.1.1 37035 1uu3A 310 5.87e+01 d.144.1.7 99999 1htyA 1015 5.96e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2ixmA 303 5.96e+01 a.268.1.1 137776 2vxiA 158 5.97e+01 2qfiA 300 5.98e+01 d.52.9.1,f.59.1.1 150734,150735 1qwnA 1045 6.00e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1p5zB 263 6.01e+01 c.37.1.1 87815 3mg9A 294 6.03e+01 1puc 105 6.05e+01 1puc 1pucA 105 6.05e+01 d.97.1.1 40675 2hmcA 344 6.06e+01 1v7nV 163 6.10e+01 a.26.1.2 100476 1ps1A 337 6.13e+01 1ps1A a.128.1.4 19450 3cvgA 294 6.13e+01 2q6fA 309 6.16e+01 3m47A 228 6.18e+01 2vl7A 540 6.23e+01 1ypfA 336 6.31e+01 2qtfA 364 6.32e+01 1j96A 323 6.33e+01 c.1.7.1 71616 1neyA 247 6.38e+01 c.1.1.1 80449 1t6jA 714 6.45e+01 a.127.1.2 112259 2cwlA 302 6.48e+01 a.25.1.3 130927 1mb4A 370 6.49e+01 c.2.1.3,d.81.1.1 78908,78909 1fkmA 396 6.50e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 2r31A 239 6.52e+01 d.381.1.1 151546 1oxxK 353 6.60e+01 b.40.6.3,c.37.1.12 93715,93716 1i2oA 316 6.61e+01 1onrA c.1.10.1 61574 2phpA 192 6.70e+01 c.74.1.2 149474 3dnzA 316 6.73e+01 1vpqA 273 6.77e+01 c.1.32.1 113974 1b2sD 90 6.77e+01 1ay7B c.9.1.1 30837 3kraB 274 6.79e+01 3hwkA 414 6.81e+01 2r91A 286 6.81e+01 1c17M 177 6.84e+01 1c17M f.18.1.1 43648 1iyxA 432 6.86e+01 c.1.11.1,d.54.1.1 83815,83816 1pv1A 299 6.88e+01 c.69.1.34 111639 3e1qA 158 6.90e+01 3gmiA 357 6.97e+01 2r40D 266 7.05e+01 a.123.1.1 151572 2vzfA 197 7.09e+01 3cygA 222 7.09e+01 2nx4A 194 7.12e+01 1ydyA 356 7.13e+01 c.1.18.3 123006 1hyt 316 7.14e+01 1hyt 1x6vA 630 7.16e+01 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3g8kA 130 7.19e+01 1exnA 290 7.20e+01 1exnA a.60.7.1,c.120.1.2 18088,33358 1c4oA 664 7.30e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 3cx5D 248 7.33e+01 a.3.1.3,f.23.11.1 157082,157083 3gd2A 229 7.36e+01 1kb9D 246 7.40e+01 a.3.1.3,f.23.11.1 77317,77318 1ezvD 245 7.41e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 3hdfA 140 7.43e+01 1a19A 90 7.49e+01 1ay7B c.9.1.1 30831 1s8eA 333 7.57e+01 d.159.1.4 105368 3ed3A 298 7.59e+01 1n2zA 245 7.60e+01 c.92.2.2 79865 3mb4A 124 7.62e+01 1yvhA 329 7.66e+01 a.39.1.7,a.48.1.1,d.93.1.1 124096,124097,124098 1vrmA 325 7.67e+01 d.96.2.1 120472 2hv6A 323 7.68e+01 a.268.1.1 136784 3ciwA 348 7.69e+01 2j1oA 268 7.70e+01 1n4aA 252 7.80e+01 c.92.2.2 85317 8tlnE 316 7.80e+01 1hyt d.92.1.2 59075 3iixA 348 7.84e+01 1sceA 112 7.85e+01 1puc d.97.1.1 40676 3daoA 283 7.89e+01 4ts1A 319 7.93e+01 2ts1 c.26.1.1 31565