# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2uytA 489 9.07e-01 1lla 628 2.95e+00 1lla 1llaA 628 2.95e+00 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2bwnA 401 8.38e+00 c.67.1.4 129368 2q0tA 263 8.95e+00 a.152.1.1 149990 1neyA 247 9.22e+00 c.1.1.1 80449 3e2cA 158 9.32e+00 1cpcA 162 1.01e+01 1cpcA a.1.1.3 15643 1i45A 248 1.03e+01 1amk c.1.1.1 61665 2vxiA 158 1.25e+01 2j6vA 301 1.67e+01 1wy1A 172 1.67e+01 3mw9A 501 1.71e+01 3e1qA 158 1.72e+01 2zumA 458 1.79e+01 3evyA 239 1.79e+01 3c0qA 301 1.87e+01 2kvcA 103 1.87e+01 3d85C 178 1.88e+01 1bcfA 158 1.91e+01 1bcfA a.25.1.1 16648 2zvrA 290 1.94e+01 2z51A 154 2.08e+01 3iopA 312 2.09e+01 2gokA 429 2.13e+01 b.92.1.10,c.1.9.17 147145,147146 2oc3A 303 2.23e+01 3hmlA 258 2.28e+01 2puzA 419 2.34e+01 b.92.1.10,c.1.9.17 149873,149874 1eg5A 384 2.46e+01 1ecxA c.67.1.3 34429 3cxbA 336 2.48e+01 1tm9A 137 2.50e+01 a.225.1.1 107150 3etdA 501 2.55e+01 1j8mF 297 2.55e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 3a9sA 595 2.60e+01 1hxhA 253 2.61e+01 c.2.1.2 76725 3i1jA 247 2.61e+01 1o5kA 306 2.62e+01 c.1.10.1 92504 1hy0A 466 2.62e+01 1auwA a.127.1.1 61392 1u16A 472 2.63e+01 a.127.1.1 112952 3fkkA 309 2.81e+01 3fkrA 309 2.81e+01 1jliA 112 2.84e+01 a.26.1.2 16884 3c4bA 265 2.85e+01 2eb1A 200 2.99e+01 2v8tA 302 3.07e+01 2cwlA 302 3.11e+01 a.25.1.3 130927 2pbxA 203 3.19e+01 1j8yF 297 3.28e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 3ge6A 212 3.30e+01 3hnhA 258 3.36e+01 1brwA 433 3.38e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1v02A 565 3.48e+01 c.1.8.4 108194 3g8wA 169 3.58e+01 2dvtA 327 3.62e+01 c.1.9.15 131793 2axtC 473 3.69e+01 f.55.1.1 144928 3kycB 660 3.72e+01 3bz1C 473 3.72e+01 1evlA 401 3.78e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 3kzqA 208 3.90e+01 1j7lA 264 4.05e+01 d.144.1.6 62697 3cprA 304 4.06e+01 2wk7A 393 4.09e+01 3js4A 227 4.21e+01 3hr0A 263 4.22e+01 1j09A 468 4.24e+01 a.97.1.1,c.26.1.1 77025,77026 3gd6A 391 4.27e+01 2czqA 205 4.30e+01 2pv7A 298 4.31e+01 a.100.1.12,c.2.1.6 149887,149888 3b4rA 224 4.31e+01 2gdzA 267 4.41e+01 c.2.1.2 135043 3a8pA 263 4.50e+01 1f2tB 148 4.54e+01 1f2tB 3hqsA 409 4.55e+01 3kkiA 409 4.55e+01 1otvA 259 4.58e+01 a.132.1.4 93526 2h5nA 133 4.64e+01 a.287.1.2 147227 2ja2A 498 4.65e+01 1wy7A 207 4.65e+01 c.66.1.32 121433 1fcyA 236 4.69e+01 2lbd a.123.1.1 19282 1o0pA 104 4.72e+01 d.58.7.1 86535 1hwxA 501 4.82e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 1fx2A 235 4.89e+01 1fx2A d.58.29.1 39430 3es5A 420 4.89e+01 2zopA 114 4.93e+01 2ragA 417 4.93e+01 3h9oA 311 4.93e+01 2i0xA 85 4.95e+01 d.58.58.1 147482 1uu3A 310 4.96e+01 d.144.1.7 99999 3k10A 179 5.01e+01 1nx8A 273 5.11e+01 b.82.2.8 86374 1xp3A 307 5.19e+01 c.1.15.1 122210 2uvpA 186 5.25e+01 2g8lA 299 5.37e+01 e.50.1.1 134775 3keyA 185 5.41e+01 2vzfA 197 5.41e+01 3c8gA 172 5.48e+01 a.285.1.1 156033 1hkkA 364 5.51e+01 c.1.8.5,d.26.3.1 90634,90635 2dpmA 284 5.56e+01 2dpmA c.66.1.28 34246 1x9nA 688 5.59e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1k7wA 468 5.60e+01 a.127.1.1 72130 2vroA 532 5.65e+01 1ku2A 241 5.76e+01 a.4.13.1,a.177.1.1 83096,83097 2qgaB 465 5.78e+01 3ie1A 431 5.86e+01 1ud0A 113 5.88e+01 a.8.4.1 99198 2izrA 330 5.90e+01 3imfA 257 5.99e+01 1q0sA 259 6.06e+01 c.66.1.28 95509 2wk9A 389 6.07e+01 3l55A 353 6.12e+01 3gs3A 257 6.16e+01 1n4kA 381 6.16e+01 a.118.22.1,b.42.6.1 79992,79993 2p3nA 256 6.16e+01 2hvgA 482 6.50e+01 1a5zA 319 6.51e+01 c.2.1.5,d.162.1.1 30181,42148 1v7mV 163 6.60e+01 a.26.1.2 100458 1yw0A 276 6.76e+01 a.266.1.1 124126 3gr0A 197 6.78e+01 2qgvA 140 6.88e+01 3jzmA 519 6.99e+01 1izmA 184 7.00e+01 a.199.1.1 90725 1e4cP 215 7.04e+01 2fua c.74.1.1 34969 1rlw 126 7.09e+01 1rlw 1rlwA 126 7.09e+01 b.7.1.1 23177 2zdbA 195 7.14e+01 1yf3A 259 7.19e+01 c.66.1.28 123046 2gblA 519 7.19e+01 c.37.1.11,c.37.1.11 134911,134912 3h5qA 436 7.19e+01 3jzjA 409 7.21e+01 2zd7A 264 7.24e+01 3enbA 222 7.27e+01 c.55.3.14 158189 2fulA 178 7.36e+01 2e8gA 241 7.40e+01 1v7nV 163 7.44e+01 a.26.1.2 100476 1xd7A 145 7.47e+01 a.4.5.55 109566 3gr1A 227 7.68e+01 2h9aA 445 7.76e+01 3hi0A 508 7.81e+01 1ps1A 337 7.84e+01 1ps1A a.128.1.4 19450 1sgwA 214 7.89e+01 c.37.1.12 105541 2nw8A 306 7.92e+01 a.266.1.1 138714 3eb2A 300 7.93e+01 3d36A 244 7.97e+01 3eypA 469 7.99e+01