# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 104lA 165 3.925e-01 1l92 d.2.1.3 36969 1sx7A 165 9.011e-01 d.2.1.3 112140 1tggA 34 9.242e-01 k.17.1.1 112423 2ov7A 135 1.833e+00 1xn9A 102 2.117e+00 d.12.1.3 115578 3guiA 163 2.167e+00 1yjmA 108 2.580e+00 b.26.1.2 123427 2k6oA 38 2.585e+00 3kt9A 103 2.597e+00 2anxA 147 2.797e+00 2brfA 101 3.093e+00 b.26.1.2 128996 2f1sA 178 4.304e+00 1ywxA 103 4.544e+00 d.12.1.3 124165 1yz1A 147 4.936e+00 b.88.1.2 124264 1lw9A 165 4.949e+00 d.2.1.3 84727 2v94A 97 5.093e+00 d.12.1.3 152795 2h5nA 133 5.681e+00 a.287.1.2 147227 1m2vB 749 5.686e+00 a.71.2.1 78497 b.2.8.1 78498 c.62.1.2 78499 d.109.2.1 78500 g.41.10.1 78501 2qhkA 149 6.148e+00 1pqzA 239 6.229e+00 b.1.1.2 104297 d.19.1.1 104298 2kl8A 86 6.415e+00 2hjqA 112 7.640e+00 a.140.3.2 147296 d.344.1.1 147297 2p1mA 91 9.184e+00 119l 163 9.619e+00 1l92 2vwaA 100 1.112e+01 2q4pA 114 1.124e+01 a.204.1.2 150041 1vmgA 84 1.164e+01 a.204.1.2 113676 3lcnA 97 1.203e+01 2bbrA 190 1.242e+01 2bj7A 137 1.290e+01 a.43.1.3 128608 d.58.18.4 128609 2qfaB 63 1.334e+01 1b6iA 163 1.406e+01 1l92 d.2.1.3 36945 1h6qA 169 1.426e+01 1h6qA b.88.1.2 60692 2q73A 91 1.466e+01 1rwhA 755 1.477e+01 a.102.3.2 97984 b.24.1.1 97985 b.30.5.2 97986 2dscA 196 1.541e+01 1uf2A 968 1.547e+01 e.28.1.2 99289 1vdyA 141 1.562e+01 1p36A 165 1.577e+01 d.2.1.3 93978 180lA 163 1.615e+01 1l92 d.2.1.3 36867 3l1lA 424 1.623e+01 2yxeA 215 1.653e+01 1bssA 231 1.675e+01 1rvaA c.52.1.2 33256 2jaqA 190 1.758e+01 137lA 163 1.769e+01 1l92 d.2.1.3 36791 1cd1A 274 1.844e+01 1cd1A b.1.1.2 21579 d.19.1.1 38155 1eonA 237 1.886e+01 1rvaA c.52.1.2 33238 1yzyA 413 1.931e+01 c.146.1.1 124292 2qgaB 455 1.954e+01 3ixgA 318 1.989e+01 1wolA 123 2.015e+01 2incB 323 2.016e+01 a.25.1.2 137525 1vajA 204 2.023e+01 d.309.1.1 119907 2k4nA 112 2.078e+01 1pjr 624 2.144e+01 1pjr 1qr7A 339 2.194e+01 1qr7A c.1.10.4 29191 1af3 146 2.234e+01 1maz 2jozA 136 2.429e+01 b.60.1.1 148164 1tqxA 222 2.453e+01 c.1.2.2 112614 2cszA 77 2.467e+01 1wlqC 186 2.484e+01 a.4.5.52 109400 1v4vA 374 2.490e+01 c.87.1.3 100313 2fcgF 26 2.509e+01 2o8qA 123 2.520e+01 1r1fA 38 2.553e+01 g.3.3.4 96815 3lm8A 215 2.567e+01 169lA 163 2.691e+01 1l92 d.2.1.3 36963 1zbdB 125 2.755e+01 1zbdB g.50.1.1 45359 2rauA 351 2.771e+01 3eagA 325 2.824e+01 3hlfA 426 2.831e+01 1lxkA 720 2.836e+01 a.102.3.2 74331 b.24.1.1 74332 b.30.5.2 74333 1x4dA 103 2.891e+01 d.58.7.1 121686 2oieA 103 2.925e+01 a.204.1.2 139092 1vjzA 326 2.930e+01 c.1.8.3 100838 1sxmA 40 2.931e+01 g.3.7.2 44150 3m72A 306 2.975e+01 1jkgA 140 3.090e+01 d.17.4.2 66795 1wo6A 26 3.102e+01 2ficA 192 3.260e+01 3khkA 489 3.317e+01 1g8fA 511 3.360e+01 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1b96A 245 3.512e+01 1rvaA c.52.1.2 33268 2g2qA 116 3.543e+01 2zt5A 531 3.569e+01 3eyyA 134 3.597e+01 175lA 163 3.632e+01 1l92 d.2.1.3 36924 168lA 165 3.640e+01 1l92 d.2.1.3 36975 174lA 165 3.644e+01 1l92 d.2.1.3 36956 2ddhA 623 3.683e+01 a.29.3.2 131394 a.29.3.2 131395 e.6.1.2 131396 2pjrA 543 3.752e+01 1pjr c.37.1.19 32395 c.37.1.19 32396 1m48A 124 3.769e+01 a.26.1.2 74443 1ad2A 225 3.774e+01 e.24.1.1 43353 1tqjA 218 3.824e+01 c.1.2.2 107228 1jliA 113 3.838e+01 a.26.1.2 16884 1viuA 181 3.883e+01 d.113.1.1 100771 2dsrG 80 3.934e+01 g.28.1.1 145094 1nknA 75 3.944e+01 h.1.26.1 85825