# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2uytA 489 6.21e-01 3kezA 461 1.33e+00 1u2xA 474 1.61e+00 c.72.1.3 107622 2p3nA 256 2.70e+00 3drwA 474 2.79e+00 3d36A 244 3.47e+00 1h6gA 256 3.49e+00 1h6gA a.24.9.1 60669 a.24.9.1 60670 3etdA 501 4.47e+00 1s2xA 206 4.76e+00 a.47.3.1 105229 3mw9A 501 5.32e+00 2kuaA 170 5.99e+00 1xsjA 778 6.66e+00 b.150.1.1 115951 b.30.5.11 115952 b.71.1.4 115953 c.1.8.13 115954 1izmA 184 7.07e+00 a.199.1.1 90725 2dpmA 284 7.10e+00 2dpmA c.66.1.28 34246 2jdiA 510 7.16e+00 a.69.1.1 145683 b.49.1.1 145684 c.37.1.11 145685 2f2hA 773 7.62e+00 b.150.1.1 132818 b.30.5.11 132819 b.71.1.4 132820 c.1.8.13 132821 3dsdA 349 7.99e+00 1hwxA 501 8.05e+00 1hwyA c.2.1.7 30250 c.58.1.1 33898 1ii7A 333 8.92e+00 1ii7A d.159.1.4 62415 1gm5A 780 9.27e+00 a.24.21.1 65298 b.40.4.9 65299 c.37.1.19 65300 c.37.1.19 65301 3dscA 349 9.33e+00 d.159.1.4 157840 2qjfA 405 9.80e+00 1z47A 355 9.88e+00 2gm6A 208 1.06e+01 b.82.1.19 147130 3enbA 222 1.18e+01 c.55.3.14 158189 2wvlA 391 1.27e+01 1s8eA 333 1.38e+01 d.159.1.4 105368 2ntoA 201 1.46e+01 1e4cP 215 1.52e+01 2fua c.74.1.1 34969 3a9sA 595 1.52e+01 3bhwA 209 1.58e+01 1fcyA 236 1.58e+01 2lbd a.123.1.1 19282 3buxB 329 1.61e+01 a.39.1.7 155647 a.48.1.1 155648 d.93.1.1 155649 1nv8A 284 1.62e+01 c.66.1.30 86224 2ixnA 310 1.62e+01 a.268.1.1 137777 2pvqA 201 1.65e+01 2qvwA 756 1.72e+01 3e2cA 158 1.76e+01 2yzsA 315 1.77e+01 2gpcA 194 1.79e+01 2ja2A 498 1.79e+01 3dbyA 269 1.80e+01 a.29.13.1 157486 a.29.13.1 157487 1jmoA 480 1.80e+01 e.1.1.1 77138 3hj4A 384 1.80e+01 1d2vC 466 1.82e+01 1mhlC 1w33A 181 1.84e+01 3evyA 239 1.87e+01 2qubA 615 1.89e+01 3hj1A 387 1.91e+01 2eb1A 200 1.93e+01 2czqA 205 1.95e+01 2lbd 267 1.98e+01 2lbd 3f9pC 467 1.98e+01 1p5sA 203 1.99e+01 a.40.1.1 94147 2rccA 346 1.99e+01 1p2xA 159 1.99e+01 a.40.1.1 104062 1hwyA 501 2.00e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 3cq0A 339 2.10e+01 2akzA 439 2.22e+01 c.1.11.1 126944 d.54.1.1 126945 1n4qB 377 2.30e+01 a.102.4.3 91636 2cruA 118 2.31e+01 a.5.6.1 130742 1fkmA 396 2.32e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1yj8A 375 2.35e+01 2pm7A 399 2.39e+01 1yvhA 329 2.40e+01 a.39.1.7 124096 a.48.1.1 124097 d.93.1.1 124098 2cwlA 302 2.40e+01 a.25.1.3 130927 1w63A 618 2.40e+01 i.23.1.1 109192 3fxhA 135 2.41e+01 1ztsA 139 2.43e+01 2fm9A 215 2.46e+01 a.257.1.1 133770 1h8eA 510 2.46e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 2g3mA 693 2.50e+01 3hy0A 441 2.60e+01 2vxiA 158 2.62e+01 1v0wA 506 2.62e+01 d.136.1.2 108220 d.136.1.2 108221 1xn8A 131 2.64e+01 a.229.1.1 115577 1wy1A 172 2.69e+01 1f0iA 504 2.71e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1ymgA 263 2.72e+01 f.19.1.1 145918 1ps1A 337 2.72e+01 1ps1A a.128.1.4 19450 1c4oA 664 2.87e+01 1d2mA c.37.1.19 32415 c.37.1.19 32416 3jslA 318 2.91e+01 1jd1A 129 2.92e+01 1qu9A d.79.1.1 62890 2nsaA 170 2.93e+01 2z51A 154 2.94e+01 3kraB 274 2.95e+01 1m4uA 206 2.98e+01 g.17.1.7 78625 1gv3A 248 3.02e+01 a.2.11.1 70585 d.44.1.1 70586 3kofA 337 3.12e+01 2o4uX 334 3.16e+01 1mhlC 466 3.16e+01 1mhlC 2zumA 458 3.21e+01 1ypfA 336 3.36e+01 1q0sA 259 3.38e+01 c.66.1.28 95509 1g8xA 1010 3.39e+01 1lvk k.1.1.1 46378 1y2mA 716 3.46e+01 2affB 44 3.47e+01 2zu0C 267 3.48e+01 1x9nA 688 3.50e+01 a.235.1.1 115002 b.40.4.6 115003 d.142.2.1 115004 3cwnA 337 3.54e+01 3i5aA 334 3.54e+01 2v8tA 302 3.57e+01 3e1qA 158 3.60e+01 1zymA 258 3.63e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1j8mF 297 3.64e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 2ez6A 221 3.64e+01 a.149.1.1 132616 d.50.1.1 132617 2r91A 286 3.65e+01 2r31A 239 3.66e+01 d.381.1.1 151546 2vzfA 197 3.67e+01 2nr5A 67 3.68e+01 a.25.6.1 148349 2npsD 82 3.72e+01 1w2wA 211 3.73e+01 c.124.1.5 109130 1vb5A 276 3.74e+01 c.124.1.5 113604 1e69B 322 3.75e+01 1e69B c.37.1.12 32377 1vplA 256 3.76e+01 c.37.1.12 113966 3g7jA 219 3.77e+01 1onrA 316 3.86e+01 1onrA c.1.10.1 29169 3dcfA 218 3.88e+01 3fvqA 359 3.89e+01 1n4aA 252 3.93e+01 c.92.2.2 85317 1n2zA 245 3.94e+01 c.92.2.2 79865 2c6cA 707 3.95e+01 a.48.2.1 129989 c.8.4.1 129990 c.56.5.5 129991 3ehmA 532 3.96e+01 3bvxA 1045 3.96e+01 a.8.3.1 155676 b.30.5.6 155677 c.6.2.1 155678 2ow6A 1045 3.97e+01 a.8.3.1 149039 b.30.5.6 149040 c.6.2.1 149041