# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2uytA 489 5.42e-01 3kezA 461 7.66e-01 1h6gA 256 1.01e+00 1h6gA a.24.9.1 60669 a.24.9.1 60670 1u2xA 474 1.46e+00 c.72.1.3 107622 2p3nA 256 1.96e+00 3fxhA 135 2.77e+00 2jdiA 510 2.90e+00 a.69.1.1 145683 b.49.1.1 145684 c.37.1.11 145685 2dpmA 284 2.99e+00 2dpmA c.66.1.28 34246 1s2xA 206 3.59e+00 a.47.3.1 105229 3drwA 474 4.00e+00 2qjfA 405 4.13e+00 1izmA 184 4.64e+00 a.199.1.1 90725 3etdA 501 4.64e+00 2kuaA 170 5.01e+00 2k2vA 126 5.51e+00 3d36A 244 5.69e+00 1hwxA 501 6.01e+00 1hwyA c.2.1.7 30250 c.58.1.1 33898 1v0wA 506 6.60e+00 d.136.1.2 108220 d.136.1.2 108221 3hj4A 384 6.63e+00 2eb1A 200 6.72e+00 3mw9A 501 6.93e+00 2p0pA 126 7.03e+00 2z51A 154 7.07e+00 1fcyA 236 7.07e+00 2lbd a.123.1.1 19282 1f0iA 504 7.25e+00 1f0iA d.136.1.2 59566 d.136.1.2 59567 3hj1A 387 7.36e+00 2wvlA 391 7.82e+00 1q0sA 259 7.97e+00 c.66.1.28 95509 3dcfA 218 8.13e+00 3enbA 222 8.36e+00 c.55.3.14 158189 2gm6A 208 8.46e+00 b.82.1.19 147130 2pm7A 399 8.64e+00 1z47A 355 8.93e+00 2lbd 267 1.01e+01 2lbd 1gm5A 780 1.02e+01 a.24.21.1 65298 b.40.4.9 65299 c.37.1.19 65300 c.37.1.19 65301 1jmoA 480 1.03e+01 e.1.1.1 77138 1ztsA 139 1.04e+01 1yf3A 259 1.07e+01 c.66.1.28 123046 2fwtA 125 1.08e+01 1gv3A 248 1.14e+01 a.2.11.1 70585 d.44.1.1 70586 2zu0C 267 1.15e+01 2gpcA 194 1.16e+01 3cq0A 339 1.21e+01 1xn8A 131 1.24e+01 a.229.1.1 115577 1e69B 322 1.24e+01 1e69B c.37.1.12 32377 1e4cP 215 1.35e+01 2fua c.74.1.1 34969 2rccA 346 1.37e+01 1w33A 181 1.38e+01 3hy0A 441 1.41e+01 2e01A 457 1.44e+01 3jslA 318 1.45e+01 2ja2A 498 1.47e+01 1p2xA 159 1.50e+01 a.40.1.1 104062 2ixnA 310 1.52e+01 a.268.1.1 137777 1ro7A 259 1.52e+01 c.130.1.1 97667 2zumA 458 1.56e+01 1h8eA 510 1.58e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 2b7uA 257 1.58e+01 1hwyA 501 1.58e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 3kofA 337 1.59e+01 2npsD 82 1.59e+01 2dqwA 294 1.62e+01 1m4uA 206 1.65e+01 g.17.1.7 78625 2ki4B 98 1.67e+01 3cqvA 199 1.68e+01 2affB 44 1.72e+01 2dhzA 120 1.73e+01 3cwnA 337 1.75e+01 3f9pC 467 1.75e+01 1d2vC 466 1.77e+01 1mhlC 2c6cA 707 1.78e+01 a.48.2.1 129989 c.8.4.1 129990 c.56.5.5 129991 1nv8A 284 1.81e+01 c.66.1.30 86224 3gcb 470 1.82e+01 3gcb 3gcbA 470 1.82e+01 d.3.1.1 37032 1p7gA 222 1.83e+01 a.2.11.1 94223 d.44.1.1 94224 3evyA 239 1.83e+01 1gcb 454 1.84e+01 3gcb 3c4bA 265 1.87e+01 3ehmA 532 1.87e+01 2akzA 439 1.88e+01 c.1.11.1 126944 d.54.1.1 126945 2gs8A 317 1.93e+01 1j7xA 302 1.94e+01 c.14.1.2 66425 1t4bA 367 1.95e+01 c.2.1.3 106406 d.81.1.1 106407 2wxfA 940 1.97e+01 1onrA 316 2.02e+01 1onrA c.1.10.1 29169 3eciA 122 2.03e+01 1rlw 126 2.06e+01 1rlw 1rlwA 126 2.06e+01 b.7.1.1 23177 2cruA 118 2.09e+01 a.5.6.1 130742 1vb5A 276 2.16e+01 c.124.1.5 113604 1yj8A 375 2.20e+01 3dsdA 349 2.21e+01 2qvwA 756 2.22e+01 1w63A 618 2.23e+01 i.23.1.1 109192 2rekA 199 2.23e+01 2v94A 107 2.25e+01 d.12.1.3 152795 3bhwA 209 2.28e+01 1p5sA 203 2.28e+01 a.40.1.1 94147 3k9vA 482 2.31e+01 1z6gA 218 2.32e+01 2f2hA 773 2.39e+01 b.150.1.1 132818 b.30.5.11 132819 b.71.1.4 132820 c.1.8.13 132821 1brmA 367 2.40e+01 1brmA c.2.1.3 30030 d.81.1.1 39945 2cbzA 237 2.43e+01 3a9sA 595 2.44e+01 3f0nA 414 2.45e+01 2wvmA 391 2.45e+01 2or4A 709 2.46e+01 a.48.2.1 139258 c.8.4.1 139259 c.56.5.5 139260 2ootA 709 2.46e+01 a.48.2.1 139176 c.8.4.1 139177 c.56.5.5 139178 2ntoA 201 2.47e+01 3buxB 329 2.47e+01 a.39.1.7 155647 a.48.1.1 155648 d.93.1.1 155649 2yzsA 315 2.54e+01 2czqA 205 2.55e+01 1jd1A 129 2.56e+01 1qu9A d.79.1.1 62890 1x9nA 688 2.60e+01 a.235.1.1 115002 b.40.4.6 115003 d.142.2.1 115004 1ii7A 333 2.64e+01 1ii7A d.159.1.4 62415 2on5A 206 2.68e+01 2nr5A 67 2.69e+01 a.25.6.1 148349 2dp3A 257 2.70e+01 3caxA 369 2.72e+01 3mcxA 477 2.74e+01 3dscA 349 2.80e+01 d.159.1.4 157840 2qubA 615 2.83e+01 1i45A 248 2.88e+01 1amk c.1.1.1 61665 1ut8A 291 2.88e+01 a.60.7.1 99908 c.120.1.2 99909 3h4gA 325 2.92e+01 2g3mA 693 2.92e+01 1vplA 256 2.93e+01 c.37.1.12 113966 1n4qB 377 2.94e+01 a.102.4.3 91636 3bhxA 709 2.96e+01 a.48.2.1 155289 c.8.4.1 155290 c.56.5.5 155291 1lis 136 2.97e+01 1lis 2lisA 136 2.97e+01 1lis a.19.1.1 16405 1j8mF 297 2.99e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 3iopA 312 2.99e+01 1mhlC 466 3.03e+01 1mhlC 2pvqA 201 3.08e+01 3bi1A 709 3.08e+01 a.48.2.1 155295 c.8.4.1 155296 c.56.5.5 155297 1oxsC 353 3.10e+01 b.40.6.3 87519 c.37.1.12 87520 1ay7B 89 3.12e+01 1ay7B c.9.1.1 30836 2bwnA 401 3.13e+01 c.67.1.4 129368 3fvqA 359 3.14e+01 2z8zA 617 3.16e+01 1j8yF 297 3.17e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1ymgA 263 3.18e+01 f.19.1.1 145918 2z8xA 617 3.18e+01 2or0A 414 3.19e+01 3c7lA 137 3.19e+01 3f3fC 570 3.25e+01 3e2cA 158 3.30e+01 1kb0A 677 3.33e+01 a.3.1.6 68378 b.70.1.1 68379 3ktbA 106 3.35e+01 2ovlA 371 3.45e+01 1xsjA 778 3.49e+01 b.150.1.1 115951 b.30.5.11 115952 b.71.1.4 115953 c.1.8.13 115954 2zu9A 394 3.52e+01 3jysA 499 3.55e+01 1cy9A 264 3.59e+01 1ecl e.10.1.1 43236 1vcsA 102 3.61e+01 a.47.2.1 119985 2p54A 267 3.61e+01 a.123.1.1 139497 2wcrA 159 3.65e+01 2himA 358 3.70e+01 1wy1A 172 3.73e+01 1fr2A 86 3.73e+01 a.28.2.1 83256 3bvxA 1045 3.74e+01 a.8.3.1 155676 b.30.5.6 155677 c.6.2.1 155678 3h9oA 311 3.74e+01 2ow6A 1045 3.75e+01 a.8.3.1 149039 b.30.5.6 149040 c.6.2.1 149041 1jliA 112 3.75e+01 a.26.1.2 16884 3lppA 898 3.78e+01 1dc1A 323 3.80e+01 1dc1A c.52.1.11 33321 1fvnA 37 3.82e+01 1fvnA j.6.1.1 46096 3dbyA 269 3.82e+01 a.29.13.1 157486 a.29.13.1 157487 2cb5A 453 3.82e+01 3gcb d.3.1.1 37035 1uu3A 310 3.96e+01 d.144.1.7 99999