Best Alignments for T0617

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
3cjnA/T0617-3cjnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cjnA/T0617-3cjnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0991e-181.68e-69
2nnnA/T0617-2nnnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2nnnA/T0617-2nnnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7802e-173.89e-67
3bpvA/T0617-3bpvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bpvA/T0617-3bpvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7856e-173.57e-67
2a61A/T0617-2a61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a61A/T0617-2a61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8499e-173.92e-69 a.4.5.28
2rdpA/T0617-2rdpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rdpA/T0617-2rdpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3305e-172.26e-70
2pexA/T0617-2pexA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2pexA/T0617-2pexA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4471e-171.22e-61
2fa5A/T0617-2fa5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fa5A/T0617-2fa5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4276e-164.61e-64
2gxgA/T0617-2gxgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gxgA/T0617-2gxgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6206e-162.48e-67
3gfmA/T0617-3gfmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3gfmA/T0617-3gfmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7356e-163.06e-67
3ecoA/T0617-3ecoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3ecoA/T0617-3ecoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2368e-161.22e-65

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001