# TARGET T0617 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0617.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2045 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.021 0.011 0.041 0.037 0.313 0.577 2 N 0.024 0.014 0.076 0.039 0.397 0.450 3 A 0.018 0.014 0.135 0.060 0.418 0.354 4 M 0.017 0.016 0.198 0.067 0.463 0.240 5 Q 0.024 0.009 0.156 0.052 0.473 0.285 6 K 0.036 0.010 0.125 0.056 0.375 0.398 7 I 0.065 0.056 0.041 0.063 0.254 0.520 8 N 0.048 0.042 0.018 0.043 0.281 0.569 9 I 0.016 0.011 0.226 0.245 0.367 0.135 10 D 0.017 0.004 0.213 0.228 0.440 0.099 11 R 0.008 0.004 0.244 0.404 0.287 0.053 12 H 0.015 0.011 0.049 0.588 0.155 0.182 13 A 0.009 0.005 0.010 0.854 0.024 0.097 14 T 0.003 0.001 0.003 0.972 0.006 0.015 15 A 0.002 0.001 0.002 0.992 0.002 0.003 16 Q 0.001 0.001 0.001 0.995 0.001 0.001 17 I 0.001 0.001 0.001 0.999 0.001 0.001 18 N 0.001 0.001 0.001 0.999 0.001 0.001 19 M 0.001 0.001 0.001 0.998 0.001 0.001 20 L 0.001 0.001 0.001 0.998 0.001 0.001 21 A 0.001 0.001 0.001 0.999 0.001 0.001 22 N 0.001 0.001 0.001 0.998 0.001 0.001 23 K 0.001 0.001 0.001 0.997 0.001 0.001 24 L 0.001 0.001 0.001 0.996 0.001 0.001 25 M 0.001 0.001 0.004 0.992 0.003 0.002 26 L 0.001 0.001 0.005 0.987 0.005 0.002 27 K 0.001 0.001 0.004 0.972 0.009 0.014 28 S 0.001 0.001 0.005 0.944 0.016 0.034 29 S 0.003 0.003 0.010 0.796 0.052 0.135 30 T 0.002 0.001 0.017 0.908 0.033 0.040 31 A 0.006 0.001 0.022 0.899 0.043 0.028 32 Y 0.005 0.002 0.011 0.955 0.017 0.011 33 T 0.005 0.002 0.017 0.917 0.039 0.019 34 Q 0.004 0.001 0.044 0.867 0.044 0.039 35 K 0.005 0.002 0.060 0.796 0.064 0.073 36 F 0.002 0.002 0.039 0.765 0.055 0.137 37 G 0.001 0.001 0.001 0.005 0.036 0.956 38 I 0.005 0.018 0.001 0.015 0.068 0.892 39 G 0.007 0.012 0.001 0.012 0.070 0.898 40 M 0.001 0.001 0.017 0.934 0.018 0.028 41 T 0.001 0.001 0.011 0.974 0.005 0.010 42 E 0.001 0.001 0.003 0.996 0.001 0.001 43 W 0.001 0.001 0.001 0.999 0.001 0.001 44 R 0.001 0.001 0.001 0.999 0.001 0.001 45 I 0.001 0.001 0.001 0.999 0.001 0.001 46 I 0.001 0.001 0.001 0.999 0.001 0.001 47 S 0.001 0.001 0.001 0.999 0.001 0.001 48 V 0.001 0.001 0.002 0.998 0.001 0.001 49 L 0.001 0.001 0.003 0.994 0.002 0.001 50 S 0.001 0.001 0.008 0.971 0.010 0.011 51 S 0.001 0.001 0.009 0.908 0.032 0.050 52 A 0.001 0.003 0.019 0.532 0.182 0.262 53 S 0.001 0.002 0.011 0.050 0.321 0.615 54 D 0.005 0.006 0.021 0.027 0.382 0.559 55 C 0.028 0.043 0.007 0.012 0.318 0.592 56 S 0.020 0.012 0.002 0.029 0.085 0.852 57 V 0.001 0.001 0.009 0.983 0.003 0.004 58 Q 0.001 0.001 0.009 0.984 0.003 0.002 59 K 0.002 0.001 0.014 0.972 0.009 0.003 60 I 0.001 0.001 0.011 0.981 0.005 0.002 61 S 0.001 0.001 0.014 0.972 0.009 0.003 62 D 0.002 0.001 0.037 0.918 0.022 0.019 63 I 0.007 0.004 0.027 0.876 0.026 0.061 64 L 0.015 0.014 0.021 0.754 0.043 0.153 65 G 0.010 0.004 0.003 0.011 0.067 0.905 66 L 0.012 0.011 0.002 0.009 0.073 0.893 67 D 0.012 0.009 0.002 0.011 0.097 0.869 68 K 0.011 0.006 0.040 0.428 0.212 0.303 69 A 0.014 0.005 0.077 0.550 0.202 0.152 70 A 0.011 0.005 0.030 0.874 0.041 0.039 71 V 0.003 0.001 0.005 0.979 0.005 0.007 72 S 0.001 0.001 0.002 0.988 0.004 0.005 73 R 0.001 0.001 0.002 0.995 0.001 0.001 74 T 0.001 0.001 0.002 0.995 0.001 0.002 75 V 0.001 0.001 0.001 0.998 0.001 0.001 76 K 0.001 0.001 0.001 0.998 0.001 0.001 77 K 0.001 0.001 0.002 0.996 0.002 0.001 78 L 0.001 0.001 0.008 0.981 0.010 0.001 79 E 0.001 0.001 0.016 0.971 0.011 0.001 80 E 0.001 0.001 0.014 0.971 0.010 0.004 81 K 0.001 0.001 0.016 0.900 0.032 0.050 82 K 0.005 0.001 0.008 0.068 0.089 0.828 83 Y 0.112 0.014 0.008 0.011 0.112 0.743 84 I 0.674 0.018 0.007 0.009 0.070 0.221 85 E 0.768 0.013 0.006 0.006 0.073 0.134 86 V 0.598 0.023 0.006 0.005 0.131 0.237 87 N 0.155 0.016 0.009 0.004 0.319 0.498 88 G 0.085 0.029 0.006 0.003 0.340 0.536 89 H 0.029 0.017 0.003 0.003 0.426 0.522 90 S 0.009 0.005 0.395 0.137 0.428 0.027 91 E 0.009 0.002 0.338 0.098 0.525 0.027 92 D 0.018 0.008 0.320 0.101 0.516 0.038 93 K 0.141 0.024 0.055 0.151 0.338 0.290 94 R 0.441 0.022 0.022 0.189 0.135 0.191 95 T 0.627 0.007 0.007 0.142 0.117 0.099 96 Y 0.796 0.002 0.002 0.089 0.043 0.069 97 A 0.907 0.001 0.001 0.060 0.012 0.019 98 I 0.910 0.001 0.001 0.074 0.006 0.008 99 N 0.798 0.003 0.001 0.175 0.006 0.018 100 L 0.626 0.009 0.002 0.147 0.033 0.182 101 T 0.083 0.003 0.003 0.075 0.112 0.724 102 E 0.029 0.003 0.048 0.551 0.179 0.190 103 M 0.009 0.002 0.047 0.801 0.106 0.035 104 G 0.009 0.003 0.045 0.812 0.088 0.043 105 Q 0.017 0.003 0.027 0.867 0.053 0.033 106 E 0.013 0.004 0.012 0.924 0.026 0.021 107 L 0.002 0.001 0.010 0.970 0.011 0.008 108 Y 0.002 0.001 0.013 0.960 0.013 0.011 109 E 0.001 0.001 0.014 0.969 0.011 0.004 110 V 0.001 0.001 0.010 0.972 0.009 0.008 111 A 0.001 0.001 0.005 0.949 0.010 0.035 112 S 0.002 0.001 0.009 0.839 0.029 0.119 113 D 0.001 0.001 0.009 0.910 0.024 0.055 114 F 0.003 0.001 0.010 0.940 0.021 0.025 115 A 0.003 0.001 0.004 0.972 0.009 0.012 116 I 0.001 0.001 0.003 0.989 0.004 0.003 117 E 0.001 0.001 0.003 0.991 0.003 0.003 118 R 0.001 0.001 0.002 0.993 0.002 0.003 119 E 0.001 0.001 0.003 0.991 0.002 0.003 120 K 0.001 0.001 0.005 0.985 0.005 0.004 121 Q 0.001 0.001 0.010 0.966 0.013 0.010 122 L 0.001 0.001 0.012 0.936 0.022 0.027 123 L 0.003 0.003 0.078 0.756 0.130 0.030 124 E 0.002 0.001 0.111 0.627 0.201 0.058 125 E 0.003 0.003 0.099 0.238 0.347 0.311 126 F 0.005 0.021 0.010 0.066 0.318 0.580 127 E 0.003 0.005 0.001 0.033 0.063 0.895 128 E 0.001 0.001 0.007 0.990 0.002 0.001 129 A 0.001 0.001 0.009 0.990 0.001 0.001 130 E 0.001 0.001 0.004 0.995 0.001 0.001 131 K 0.001 0.001 0.001 0.999 0.001 0.001 132 D 0.001 0.001 0.001 0.999 0.001 0.001 133 Q 0.001 0.001 0.001 0.999 0.001 0.001 134 L 0.001 0.001 0.001 0.999 0.001 0.001 135 F 0.001 0.001 0.001 0.999 0.001 0.001 136 I 0.001 0.001 0.001 0.999 0.001 0.001 137 L 0.001 0.001 0.001 0.999 0.001 0.001 138 L 0.001 0.001 0.001 0.999 0.001 0.001 139 K 0.001 0.001 0.001 0.999 0.001 0.001 140 K 0.001 0.001 0.001 0.999 0.001 0.001 141 L 0.001 0.001 0.001 0.998 0.001 0.001 142 R 0.001 0.001 0.005 0.991 0.002 0.001 143 N 0.001 0.001 0.005 0.985 0.005 0.005 144 K 0.001 0.001 0.013 0.882 0.031 0.073 145 V 0.001 0.002 0.062 0.686 0.114 0.135 146 D 0.003 0.003 0.081 0.459 0.186 0.268 147 Q 0.005 0.004 0.061 0.297 0.170 0.464 148 M 0.007 0.003 0.005 0.030 0.091 0.864