# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	3.13e-24	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.2435	a.211.1.1	150782
2gz4A	207	0.5287	a.211.1.1	147196
3b57A	209	1.896	a.211.1.1	154835
3igfA	374	1.951		
2pq7A	220	6.893	a.211.1.1	149786
2ogiA	196	9.765		
2parA	201	11.68		
3gcgA	182	14.66		
2o08A	188	19.20		
1xx7A	184	22.78	a.211.1.1	116143
1vqrA	297	23.39	a.211.1.3	114015
3b9pA	297	23.60		
1jhdA	396	23.65	b.122.1.3,c.26.1.5	66712,66713
3broA	141	24.01	a.4.5.28	155517
2bo4A	397	25.98	c.68.1.18	128869
1an0A	190	27.34	c.37.1.8	32066
1w5cT	163	28.83	i.5.1.1	114227
1hg7A	66	28.84	b.85.1.1	28280
1mh1A	186	29.84	c.37.1.8	32002
1b7iA	66	34.68	b.85.1.1	28288
2dqbA	376	35.18		
3dmyA	480	36.92		
3focA	451	37.57		
1lnqA	336	37.58	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
2pw6A	271	38.24	c.56.6.1	149895
1a59A	378	39.73	a.103.1.1	18902
1dysA	348	40.64	c.6.1.1	30669
1b7kA	66	41.48	b.85.1.1	28306
2k9mA	130	44.75		
3gflA	146	44.98		
1vquA	374	45.14		
2o3jA	481	45.52		
1am4D	177	45.65	c.37.1.8	32068
3hc1A	305	46.62		
2js5A	71	47.26		
1oc7A	364	48.36	c.6.1.1	86794
2pa4A	323	50.03		
2h12A	436	50.98		
3ihoA	138	52.92		
3gfjA	146	53.04		
2gxgA	146	56.01		
2bvwA	362	59.14	c.6.1.1	30666
1e6wA	260	60.33	c.2.1.2	59326
3m1tA	275	60.33		
1bvwA	360	61.54	c.6.1.1	30668
1ns5A	155	63.94	c.116.1.3	80705
1lv7A	257	67.94	c.37.1.20	78232
3memA	457	68.40		
1sz7A	200	73.58		
2e29A	92	74.59	d.58.7.5	146643
1ucsA	64	76.12	b.85.1.1	88466
3cnyA	301	77.15		
2h1vA	310	77.20		
3lagA	98	78.47		
2nx9A	464	78.67		
3mzoA	216	78.79		
2dgxA	96	80.52	d.58.7.1	131515
3d3mA	168	80.69		
2paqA	201	82.49	a.211.1.1	139643
3ecoA	139	82.96		
1s6lA	212	83.74	a.4.5.79,d.357.1.2	145773,145774
3bwdD	182	84.60		
3gfmA	146	85.49		
1z9lA	128	87.71		
3csxA	81	87.80		
3ivlA	208	88.42