# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vj7A 393 5.88e-25 a.211.1.1,d.218.1.8 100801,100802 2qgsA 225 0.1107 a.211.1.1 150782 2gz4A 207 0.3177 a.211.1.1 147196 3b57A 209 0.4862 a.211.1.1 154835 2pq7A 220 1.098 a.211.1.1 149786 3broA 141 3.587 a.4.5.28 155517 2ogiA 196 3.822 1xx7A 184 5.121 a.211.1.1 116143 3igfA 374 5.834 2o08A 188 7.355 2parA 201 7.883 3ecoA 139 11.14 2k9mA 130 11.98 1vqrA 297 13.25 a.211.1.3 114015 1vhtA 218 19.34 c.37.1.1 100700 1sz7A 200 22.12 3f4rA 226 24.13 3gcgA 182 24.25 1wi3A 71 25.57 a.4.1.1 114660 3dmyA 480 26.38 3gflA 146 26.48 2paqA 201 27.74 a.211.1.1 139643 2gxgA 146 28.07 3ivlA 208 29.11 3fgqA 397 29.44 1on2A 142 31.19 a.4.5.24,a.76.1.1 87103,87104 1t95A 240 32.09 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 3hc1A 305 32.21 1hg7A 66 32.42 b.85.1.1 28280 3m1tA 275 32.88 2nnnA 140 33.02 1s6lA 212 33.15 a.4.5.79,d.357.1.2 145773,145774 2j3mA 572 33.89 3gfmA 146 33.93 1a59A 378 35.02 a.103.1.1 18902 1uanA 227 36.41 c.134.1.1 99135 1p9qC 256 36.81 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 3mzoA 216 37.29 3kbbA 216 37.32 3f3xA 144 37.70 1b7kA 66 40.08 b.85.1.1 28306 1b7iA 66 40.12 b.85.1.1 28288 2bv6A 142 40.38 a.4.5.28 146218 1w5cT 163 41.58 i.5.1.1 114227 2wf7A 221 41.61 2wkpA 332 41.96 1jjvA 206 42.20 c.37.1.1 71698 1zxoA 291 42.48 c.55.1.5,c.55.1.5 125784,125785 2wkrA 332 42.72 1z9lA 128 42.76 2dqbA 376 42.94 3d3kA 259 43.00 1mh1A 186 44.96 c.37.1.8 32002 3gfjA 146 45.35 3ccgA 190 45.48 3e6mA 161 45.53 3lahA 188 45.79 2h12A 436 46.79 1am4D 177 47.82 c.37.1.8 32068 3mc1A 226 48.14 3memA 457 48.86 1s9aA 257 49.14 b.3.6.1 105379 1z67A 135 50.20 a.259.1.1 124507 3fm5A 150 50.76 1z91A 147 52.35 a.4.5.28 124736 2nx9A 464 53.62 1ev7A 317 54.47 c.52.1.9 33315 3lqsA 280 55.04 1dysA 348 56.37 c.6.1.1 30669 2rinA 298 58.03 1ucsA 64 58.18 b.85.1.1 88466 1vquA 374 58.48 1qbkB 890 59.04 a.118.1.1 19127 2pw6A 271 61.76 c.56.6.1 149895 1n83A 270 61.88 a.123.1.1 80276 2wkqA 332 62.23 3kh1A 200 65.18 2e29A 92 65.18 d.58.7.5 146643 2js5A 71 65.40 3ljxA 288 66.77 1y6xA 93 66.92 a.204.1.4 122676 2a7wA 116 67.05 a.204.1.4 126369 2bo4A 397 68.33 c.68.1.18 128869 3bwdD 182 69.15 1tmxA 293 69.42 3h87C 73 70.03 3ih6A 197 71.50 1cshA 435 72.28 a.103.1.1 18880 1xafA 246 72.89 d.194.1.2 109535 2eiyA 308 75.43 3kd6A 313 76.83 1k3pA 426 77.32 a.103.1.1 77237 2zxiA 637 77.93 1fpqA 372 78.13 a.4.5.29,c.66.1.12 59947,59948 3b9pA 297 78.39 1ymmB 198 82.38 b.1.1.2,d.19.1.1 123703,123704 1jr3D 343 83.40 a.80.1.1,c.37.1.20 63251,63252 1mo9A 523 83.73 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 3csxA 81 86.29 3g0tA 437 86.51 1an0A 190 86.89 c.37.1.8 32066 2ac4A 309 88.39 1afrA 345 88.68 a.25.1.2 16805 2o09A 189 88.91