# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	4.81e-24	a.211.1.1,d.218.1.8	100801,100802
2gz4A	207	0.1417	a.211.1.1	147196
2qgsA	225	0.1997	a.211.1.1	150782
3b57A	209	1.110	a.211.1.1	154835
3igfA	374	5.690		
2o08A	188	5.965		
2pq7A	220	6.221	a.211.1.1	149786
2ogiA	196	7.659		
1xx7A	184	7.847	a.211.1.1	116143
1p2fA	220	11.08	a.4.6.1,c.23.1.1	87720,87721
3gcgA	182	12.00		
1vhtA	218	13.51	c.37.1.1	100700
1mh1A	186	13.99	c.37.1.8	32002
2parA	201	14.06		
1dysA	348	15.96	c.6.1.1	30669
3broA	141	17.29	a.4.5.28	155517
1an0A	190	18.15	c.37.1.8	32066
2bo4A	397	22.52	c.68.1.18	128869
1vqrA	297	23.00	a.211.1.3	114015
3gflA	146	25.27		
3dmyA	480	25.29		
2q73A	100	26.25		
1hg7A	66	27.27	b.85.1.1	28280
2wkrA	332	28.08		
1e6wA	260	28.85	c.2.1.2	59326
3bwdD	182	29.08		
2eiyA	308	29.60		
1vquA	374	31.60		
1b7iA	66	31.78	b.85.1.1	28288
3gfmA	146	32.48		
1on2A	142	32.54	a.4.5.24,a.76.1.1	87103,87104
3h87C	73	35.24		
3f3xA	144	35.53		
1lnqA	336	37.56	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
2bvwA	362	38.20	c.6.1.1	30666
2h12A	436	38.52		
3ccgA	190	39.04		
1a59A	378	40.28	a.103.1.1	18902
3b9pA	297	40.45		
3m1tA	275	41.30		
1b7kA	66	42.45	b.85.1.1	28306
1oc7A	364	43.78	c.6.1.1	86794
2wkpA	332	43.82		
2gxgA	146	45.07		
3gfjA	146	45.51		
1lv7A	257	46.69	c.37.1.20	78232
1jjvA	206	46.97	c.37.1.1	71698
1iomA	377	50.09	a.103.1.1	83698
3lqsA	280	50.10		
3kxdA	224	50.41		
2a7wA	116	51.52	a.204.1.4	126369
2frhA	127	54.45	a.4.5.28	133988
1bvwA	360	55.21	c.6.1.1	30668
2iwrA	178	58.26		
2nx9A	464	58.49		
2wkqA	332	59.91		
1ns5A	155	60.98	c.116.1.3	80705
3lahA	188	61.03		
1am4D	177	62.27	c.37.1.8	32068
1dgkN	917	62.61	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
3memA	457	64.47		
2js5A	71	65.01		
3hc1A	305	65.47		
1n83A	270	67.56	a.123.1.1	80276
1gt1A	159	68.40	b.60.1.1	90515
1jhdA	396	72.63	b.122.1.3,c.26.1.5	66712,66713
1y6xA	93	78.65	a.204.1.4	122676
3ljxA	288	79.33		
3ecoA	139	79.37		
2q3hA	201	82.05		
1tmxA	293	83.60		
2dqbA	376	85.82		
2o09A	189	87.70		
2pw6A	271	88.66	c.56.6.1	149895
3csxA	81	89.31