# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	2.76e-23	a.211.1.1,d.218.1.8	100801,100802
2gz4A	207	0.2076	a.211.1.1	147196
2qgsA	225	0.3641	a.211.1.1	150782
3b57A	209	1.781	a.211.1.1	154835
2pq7A	220	5.394	a.211.1.1	149786
2o08A	188	6.171		
3gcgA	182	6.940		
1mh1A	186	8.199	c.37.1.8	32002
2ogiA	196	8.680		
1xx7A	184	10.23	a.211.1.1	116143
1an0A	190	10.50	c.37.1.8	32066
3igfA	374	13.11		
2parA	201	17.52		
2wkrA	332	17.57		
3dmyA	480	18.74		
3bwdD	182	19.51		
1vhtA	218	19.90	c.37.1.1	100700
1p2fA	220	21.37	a.4.6.1,c.23.1.1	87720,87721
1hg7A	66	22.60	b.85.1.1	28280
2wkpA	332	24.18		
1lnqA	336	24.35	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
1e6wA	260	26.66	c.2.1.2	59326
1b7iA	66	27.79	b.85.1.1	28288
1vqrA	297	28.19	a.211.1.3	114015
2eiyA	308	29.10		
3b9pA	297	31.00		
1b7kA	66	31.21	b.85.1.1	28306
3broA	141	31.94	a.4.5.28	155517
3gflA	146	35.21		
1am4D	177	36.23	c.37.1.8	32068
1lv7A	257	37.19	c.37.1.20	78232
1dysA	348	37.28	c.6.1.1	30669
1vquA	374	38.09		
2wkqA	332	39.32		
2bo4A	397	40.27	c.68.1.18	128869
3f3xA	144	41.87		
2iwrA	178	43.80		
2h12A	436	43.96		
1jhdA	396	44.92	b.122.1.3,c.26.1.5	66712,66713
3gfmA	146	46.13		
2q3hA	201	46.14		
3ccgA	190	48.72		
1on2A	142	48.77	a.4.5.24,a.76.1.1	87103,87104
3kxdA	224	50.03		
1a59A	378	52.12	a.103.1.1	18902
2gxgA	146	53.04		
1jjvA	206	53.80	c.37.1.1	71698
3m1tA	275	54.17		
3gfjA	146	54.42		
2gjsA	176	55.64	c.37.1.8	135287
3lqsA	280	58.32		
3h87C	73	58.90		
2q73A	100	59.58		
1ns5A	155	63.19	c.116.1.3	80705
3cnyA	301	63.44		
2rexB	197	63.76		
2frhA	127	67.44	a.4.5.28	133988
2j0vA	212	67.58		
3hc1A	305	70.19		
1fjcA	96	71.16	d.58.7.1	39212
2nx9A	464	71.35		
1iomA	377	73.22	a.103.1.1	83698
1eesA	178	73.22	c.37.1.8	32073
1huqA	164	73.32	c.37.1.8	32020
1yzqA	170	73.86	c.37.1.8	124286
1z0jA	170	74.41	c.37.1.8	124319
1r5yA	386	79.56	c.1.20.1	97134
2e29A	92	79.86	d.58.7.5	146643
1bdb	277	80.67		
2g6bA	180	81.41	c.37.1.8	134701
3memA	457	83.04		
2c5kT	95	83.62		
2a7wA	116	85.06	a.204.1.4	126369
2yy8A	201	85.71		
2qulA	290	85.93		
3d3mA	168	85.99		
2js5A	71	87.50		
3ljxA	288	87.75		
2bvwA	362	87.85	c.6.1.1	30666