# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	1.69e-23	a.211.1.1,d.218.1.8	100801,100802
2gz4A	207	0.2108	a.211.1.1	147196
2qgsA	225	0.3810	a.211.1.1	150782
3b57A	209	2.966	a.211.1.1	154835
2o08A	188	5.767		
2ogiA	196	7.610		
3igfA	374	8.493		
2pq7A	220	8.523	a.211.1.1	149786
1p2fA	220	9.300	a.4.6.1,c.23.1.1	87720,87721
3gcgA	182	10.45		
1xx7A	184	10.64	a.211.1.1	116143
1mh1A	186	12.26	c.37.1.8	32002
1vhtA	218	18.06	c.37.1.1	100700
2parA	201	20.38		
1an0A	190	21.56	c.37.1.8	32066
1dysA	348	24.05	c.6.1.1	30669
1lnqA	336	24.21	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
3bwdD	182	25.09		
1hg7A	66	25.63	b.85.1.1	28280
2wkrA	332	28.72		
3broA	141	29.58	a.4.5.28	155517
1e6wA	260	30.35	c.2.1.2	59326
1vqrA	297	30.42	a.211.1.3	114015
1vquA	374	31.18		
1b7iA	66	34.10	b.85.1.1	28288
3dmyA	480	36.26		
3b9pA	297	37.74		
2h12A	436	38.26		
3kxdA	224	38.30		
1b7kA	66	38.57	b.85.1.1	28306
3gflA	146	38.61		
1jhdA	396	39.25	b.122.1.3,c.26.1.5	66712,66713
2bo4A	397	41.07	c.68.1.18	128869
1a59A	378	41.31	a.103.1.1	18902
3ccgA	190	42.01		
2wkpA	332	43.61		
1lv7A	257	44.57	c.37.1.20	78232
3h87C	73	44.99		
2q73A	100	45.90		
2iwrA	178	47.16		
2frhA	127	49.24	a.4.5.28	133988
2eiyA	308	49.71		
1jjvA	206	50.29	c.37.1.1	71698
3m1tA	275	50.38		
2bvwA	362	50.87	c.6.1.1	30666
3f3xA	144	53.52		
2gjsA	176	54.32	c.37.1.8	135287
1am4D	177	54.75	c.37.1.8	32068
1on2A	142	55.05	a.4.5.24,a.76.1.1	87103,87104
3gfmA	146	55.05		
1gesA	450	59.70	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
2gxgA	146	61.83		
1oc7A	364	66.77	c.6.1.1	86794
1dgkN	917	67.28	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33487,33488,33489,33490
1ns5A	155	68.18	c.116.1.3	80705
2wkqA	332	68.18		
2nx9A	464	70.51		
3gfjA	146	70.72		
2q3hA	201	73.04		
2rexB	197	74.23		
1fjcA	96	76.22	d.58.7.1	39212
1bvwA	360	78.57	c.6.1.1	30668
1eesA	178	80.01	c.37.1.8	32073
2js5A	71	81.02		
1iomA	377	81.42	a.103.1.1	83698
1id1A	153	81.89	c.2.1.9	62286
1huqA	164	82.20	c.37.1.8	32020
1ek0A	170	83.21	c.37.1.8	32076
2aefA	234	85.01		
3hc1A	305	86.57		
3d3mA	168	86.57		
3ia8A	163	88.02		
2j0vA	212	88.97		
2a7wA	116	89.16	a.204.1.4	126369
3lqsA	280	89.62