# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	6.44e-24	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.2470	a.211.1.1	150782
2gz4A	207	0.3258	a.211.1.1	147196
3b57A	209	1.527	a.211.1.1	154835
2parA	201	7.376		
1xx7A	184	8.163	a.211.1.1	116143
2pq7A	220	8.265	a.211.1.1	149786
3igfA	374	9.738		
2ogiA	196	12.87		
3broA	141	20.14	a.4.5.28	155517
3gcgA	182	20.55		
1vqrA	297	21.26	a.211.1.3	114015
1w5cT	163	27.03	i.5.1.1	114227
1p2fA	220	27.07	a.4.6.1,c.23.1.1	87720,87721
3dmyA	480	28.57		
1an0A	190	31.14	c.37.1.8	32066
2paqA	201	32.57	a.211.1.1	139643
1mh1A	186	33.80	c.37.1.8	32002
1a59A	378	35.94	a.103.1.1	18902
1hg7A	66	36.78	b.85.1.1	28280
1am4D	177	38.22	c.37.1.8	32068
1jhdA	396	38.57	b.122.1.3,c.26.1.5	66712,66713
1b7kA	66	40.76	b.85.1.1	28306
1b7iA	66	40.90	b.85.1.1	28288
1vquA	374	43.35		
2js5A	71	46.26		
3ihoA	138	46.81		
1zy7A	403	52.33		
2wkpA	332	54.15		
1n83A	270	55.59	a.123.1.1	80276
3csxA	81	55.81		
3gflA	146	56.36		
2wkrA	332	56.41		
2o08A	188	57.07		
3bwdD	182	60.23		
2gxgA	146	62.21		
1dysA	348	66.52	c.6.1.1	30669
2bo4A	397	70.44	c.68.1.18	128869
2k9mA	130	73.16		
3gfmA	146	74.50		
3fefA	450	75.60		
1wi3A	71	77.77	a.4.1.1	114660
3ecoA	139	78.91		
1e6wA	260	79.80	c.2.1.2	59326
3kh1A	200	80.25		
3gfjA	146	82.60		
1t95A	240	83.12	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1lnqA	336	84.91	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
2nlwA	105	86.16		
2dgxA	96	87.08	d.58.7.1	131515
2dqbA	376	88.40		
1fj7A	101	89.09	d.58.7.1	39209