# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	1.15e-22	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.3016	a.211.1.1	150782
2gz4A	207	0.9913	a.211.1.1	147196
3b57A	209	1.701	a.211.1.1	154835
2pq7A	220	6.209	a.211.1.1	149786
3igfA	374	7.552		
2parA	201	8.405		
3gcgA	182	10.88		
1xx7A	184	11.20	a.211.1.1	116143
2ogiA	196	11.57		
1mh1A	186	14.96	c.37.1.8	32002
1an0A	190	17.95	c.37.1.8	32066
3broA	141	19.72	a.4.5.28	155517
3dmyA	480	20.18		
1vqrA	297	20.64	a.211.1.3	114015
2wkpA	332	20.94		
2wkrA	332	22.14		
1am4D	177	23.60	c.37.1.8	32068
1vquA	374	24.60		
2o08A	188	26.04		
2js5A	71	31.00		
3bwdD	182	31.18		
2paqA	201	31.88	a.211.1.1	139643
1hg7A	66	36.24	b.85.1.1	28280
3ihoA	138	36.96		
1p2fA	220	37.78	a.4.6.1,c.23.1.1	87720,87721
1jhdA	396	42.89	b.122.1.3,c.26.1.5	66712,66713
3hc1A	305	45.80		
3csxA	81	47.09		
1lnqA	336	47.26	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
2bo4A	397	48.69	c.68.1.18	128869
1b7iA	66	48.91	b.85.1.1	28288
1dysA	348	49.37	c.6.1.1	30669
1vhtA	218	49.52	c.37.1.1	100700
2wkqA	332	51.69		
1e6wA	260	53.19	c.2.1.2	59326
2pw6A	271	54.09	c.56.6.1	149895
1w5cT	163	56.29	i.5.1.1	114227
1vprA	374	56.70	b.60.1.7	120066
2dqbA	376	57.32		
3m1tA	275	57.40		
2k9mA	130	58.48		
1b7kA	66	60.13	b.85.1.1	28306
1wi3A	71	64.23	a.4.1.1	114660
1sz7A	200	71.05		
3gflA	146	71.86		
1eesA	178	72.72	c.37.1.8	32073
1mo9A	523	73.54	c.3.1.5,c.3.1.5,d.87.1.1	79341,79342,79343
3gfmA	146	75.38		
2gxgA	146	76.33		
1ns5A	155	77.21	c.116.1.3	80705
1kxpD	458	78.30	a.126.1.1,a.126.1.1,a.126.1.1	73160,73161,73162
2bvwA	362	79.22	c.6.1.1	30666
3b9pA	297	81.60		
1n83A	270	82.34	a.123.1.1	80276
1ev7A	317	83.54	c.52.1.9	33315
2q3hA	201	83.97		
1t95A	240	84.81	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2b5tI	432	85.00	e.1.1.1	127905
17gsA	210	85.28	a.45.1.1,c.47.1.5	17524,32818
3e6mA	161	85.32		
3ecoA	139	85.55		
1oc7A	364	86.62	c.6.1.1	86794
1tmxA	293	88.55		
2q73A	100	88.56		
3ljxA	288	89.06		
1bvwA	360	89.37	c.6.1.1	30668