# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	5.58e-22	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.04907	a.211.1.1	150782
3b57A	209	0.6468	a.211.1.1	154835
2gz4A	207	0.9738	a.211.1.1	147196
2ogiA	196	3.152		
1e6wA	260	8.492	c.2.1.2	59326
2pq7A	220	9.194	a.211.1.1	149786
2o08A	188	10.39		
1ifqA	138	20.93	d.110.4.1	62350
1eesA	178	27.06	c.37.1.8	32073
2parA	201	27.95		
3ccgA	190	33.11		
2f20A	240	35.20	d.303.1.1	132791
1qguA	478	37.74	c.92.2.3	35625
1azsA	220	39.22	d.58.29.1	39416
1culA	217	46.85	d.58.29.1	39417
1yo6A	250	51.39	c.2.1.2	123769
2dgxA	96	52.97	d.58.7.1	131515
2w01A	208	57.10		
1xx7A	184	57.25	a.211.1.1	116143
2exuA	200	57.58		
1e3sA	261	58.33	c.2.1.2	59201
1vprA	374	58.36	b.60.1.7	120066
1wc1A	226	61.58	d.58.29.1	114492
1on2A	142	61.91	a.4.5.24,a.76.1.1	87103,87104
1p2fA	220	62.00	a.4.6.1,c.23.1.1	87720,87721
2puzA	419	63.92	b.92.1.10,c.1.9.17	149873,149874
3hc1A	305	64.15		
3hbzA	342	64.93		
1wi3A	71	67.88	a.4.1.1	114660
2paqA	201	67.95	a.211.1.1	139643
3b9pA	297	68.53		
1oc7A	364	68.84	c.6.1.1	86794
3m1tA	275	73.81		
2nnnA	140	74.01		
1am4D	177	75.95	c.37.1.8	32068
1z9lA	128	78.95		
1hg7A	66	81.30	b.85.1.1	28280
3broA	141	81.87	a.4.5.28	155517
3fgqA	397	82.72		
1hdcA	253	86.45	c.2.1.2	29862
2ek6A	95	89.18		
1bdb	277	89.20