# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	7.92e-20	a.211.1.1,d.218.1.8	100801,100802
2gz4A	207	0.2529	a.211.1.1	147196
3b57A	209	0.5551	a.211.1.1	154835
2ogiA	196	0.7143		
2qgsA	225	0.7396	a.211.1.1	150782
2parA	201	3.001		
3kh1A	200	3.854		
1xjjA	644	4.282		
2o08A	188	4.557		
3ccgA	190	5.157		
3ljxA	288	7.511		
2pq7A	220	10.40	a.211.1.1	149786
1vqrA	297	11.62	a.211.1.3	114015
1khdA	345	11.71	a.46.2.1,c.27.1.1	77400,77401
2k9mA	130	12.01		
2pw6A	271	13.19	c.56.6.1	149895
3e7qA	215	13.57		
3mzoA	216	15.51		
1ynbA	173	16.09	a.211.1.1	123718
3memA	457	16.34		
2z0qA	346	20.67		
2ifcA	385	23.34		
2h12A	436	23.67		
2au3A	407	24.64		
1ct9A	553	26.91	c.26.2.1,d.153.1.1	31616,41834
2iyvA	184	27.93	c.37.1.2	137812
1csh	435	30.21		
2paqA	201	30.49	a.211.1.1	139643
1xx7A	184	30.71	a.211.1.1	116143
3khpA	311	31.92		
1ee4A	423	32.30	a.118.1.1	19128
2x58A	727	34.49		
1bouB	302	37.40	c.56.6.1	33859
1cshA	435	38.30	a.103.1.1	18880
1jdhA	529	46.41	a.118.1.1	66549
1p9qC	256	50.09	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
3kndA	460	51.71		
3g7dA	443	52.45		
3g1yA	228	54.59		
2zz2A	252	55.36		
1km3A	247	56.34	c.1.2.3	72739
2ekdA	207	57.33		
1km4A	247	57.51	c.1.2.3	72740
3g1aA	228	57.63		
1a59A	378	59.59	a.103.1.1	18902
2bv6A	142	59.67	a.4.5.28	146218
3f3kA	265	63.67		
1ee5A	424	64.08	a.118.1.1	19132
2bogX	286	64.79		
1txdA	385	67.90	a.87.1.1,b.55.1.1	107422,107423
3hc1A	305	72.26		
1dd9A	338	72.71	e.13.1.1	43254
2jzbB	74	76.05		
2kh9A	92	77.40		
1uozA	315	79.21	c.6.1.1	113354
1ytlA	174	80.65	c.31.1.6	124008
3ju7A	377	80.79		
2zz3A	252	81.83		
1t08A	519	82.58	a.118.1.1	112190
2hydA	578	84.49	c.37.1.12,f.37.1.1	136875,136876
2dfkA	402	87.48	a.87.1.1,b.55.1.1	145077,145078
2x0lB	133	88.41		
1sxjC	340	88.54	a.80.1.1,c.37.1.20	106085,106086
2bptA	861	89.34	a.118.1.1	128951