# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	5.77e-21	a.211.1.1,d.218.1.8	100801,100802
2gz4A	207	0.09188	a.211.1.1	147196
3b57A	209	0.1584	a.211.1.1	154835
2ogiA	196	0.1703		
2qgsA	225	0.1800	a.211.1.1	150782
2o08A	188	0.5907		
3ccgA	190	0.9227		
2parA	201	2.894		
1xjjA	644	3.484		
1vqrA	297	4.558	a.211.1.3	114015
3kh1A	200	4.655		
1ynbA	173	5.923	a.211.1.1	123718
3ljxA	288	8.680		
2h12A	436	10.24		
3memA	457	10.60		
2pq7A	220	12.34	a.211.1.1	149786
3e7qA	215	12.62		
3mzoA	216	13.06		
1ee4A	423	13.47	a.118.1.1	19128
1khdA	345	14.14	a.46.2.1,c.27.1.1	77400,77401
3m1tA	275	16.95		
3khpA	311	17.06		
2paqA	201	18.65	a.211.1.1	139643
1ee5A	424	19.11	a.118.1.1	19132
2k9mA	130	21.01		
1za0A	275	21.12	a.25.1.2	124774
2bv6A	142	21.54	a.4.5.28	146218
2iyvA	184	22.96	c.37.1.2	137812
1xx7A	184	24.27	a.211.1.1	116143
1csh	435	24.99		
2pw6A	271	25.72	c.56.6.1	149895
1cshA	435	28.39	a.103.1.1	18880
2ifcA	385	28.51		
2x58A	727	35.72		
2ekdA	207	36.40		
2pq6A	482	36.55	c.87.1.10	149785
1xi9A	406	37.29	c.67.1.1	115355
1ct9A	553	39.68	c.26.2.1,d.153.1.1	31616,41834
3kndA	460	40.59		
1sxjC	340	41.17	a.80.1.1,c.37.1.20	106085,106086
1oshA	232	42.86	a.123.1.1	93496
1txdA	385	43.66	a.87.1.1,b.55.1.1	107422,107423
1jdhA	529	45.60	a.118.1.1	66549
1z91A	147	48.84	a.4.5.28	124736
3hc1A	305	50.19		
2bnlA	136	50.33		
2dfkA	402	50.82	a.87.1.1,b.55.1.1	145077,145078
1a59A	378	51.12	a.103.1.1	18902
3m5fA	244	51.27		
2aaxA	275	52.44		
2z0qA	346	54.96		
3i7aA	281	55.43		
2isnA	364	55.75		
1ytlA	174	58.39	c.31.1.6	124008
2bptA	861	59.71	a.118.1.1	128951
3dg9A	248	59.84		
3ju7A	377	62.94		
2kh9A	92	64.35		
3f3kA	265	68.72		
2weeA	197	71.85		
2wawA	199	76.22		
3d2wA	89	78.45		
1go3F	107	78.83	a.60.8.2	65407
3g7dA	443	80.67		
2x0lB	133	81.44		
1on2A	142	81.76	a.4.5.24,a.76.1.1	87103,87104
2q14A	410	81.94		
1xqsA	280	84.48	a.118.1.21	122243
1owcA	427	86.03	a.103.1.1	104039
2p2wA	367	87.30		
3hsrA	140	87.42		
1dd9A	338	89.73	e.13.1.1	43254