# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	1.14e-19	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.05797	a.211.1.1	150782
2gz4A	207	0.1634	a.211.1.1	147196
3b57A	209	0.2368	a.211.1.1	154835
2ogiA	196	0.2833		
2o08A	188	0.7511		
3ccgA	190	1.871		
2parA	201	3.067		
3mzoA	216	3.413		
2pq7A	220	3.485	a.211.1.1	149786
3kh1A	200	4.190		
1xjjA	644	4.857		
3memA	457	9.384		
1ynbA	173	14.78	a.211.1.1	123718
1jdhA	529	15.16	a.118.1.1	66549
3kndA	460	15.40		
3ljxA	288	15.41		
2k9mA	130	15.58		
1khdA	345	18.93	a.46.2.1,c.27.1.1	77400,77401
1vqrA	297	23.20	a.211.1.3	114015
2iyvA	184	23.86	c.37.1.2	137812
3e7qA	215	23.93		
3m5fA	244	24.43		
2h12A	436	25.72		
1xx7A	184	26.41	a.211.1.1	116143
2ifcA	385	29.16		
1csh	435	30.60		
1ee5A	424	33.99	a.118.1.1	19132
1a59A	378	36.63	a.103.1.1	18902
1ee4A	423	36.97	a.118.1.1	19128
2ekdA	207	37.36		
3f3kA	265	39.73		
1p9qC	256	40.56	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
3d2wA	89	41.09		
3khpA	311	41.24		
2z0qA	346	44.36		
2kh9A	92	45.91		
2pq6A	482	48.13	c.87.1.10	149785
2pw6A	271	60.38	c.56.6.1	149895
2isnA	364	60.98		
1ct9A	553	64.54	c.26.2.1,d.153.1.1	31616,41834
1on2A	142	65.23	a.4.5.24,a.76.1.1	87103,87104
1z91A	147	68.63	a.4.5.28	124736
3ju7A	377	69.02		
1px5A	349	69.17	a.160.1.2,d.218.1.6	95277,95278
2bv6A	142	71.29	a.4.5.28	146218
3m1tA	275	71.62		
3g7dA	443	72.87		
1cshA	435	75.11	a.103.1.1	18880
2paqA	201	75.33	a.211.1.1	139643
1yo6A	250	76.75	c.2.1.2	123769
1za0A	275	79.22	a.25.1.2	124774
1gw5A	621	83.65	a.118.1.10	70629
2au3A	407	83.83		
2i33A	258	86.03		
1e6wA	260	86.49	c.2.1.2	59326
1eq2A	310	89.02	c.2.1.2	29814
2ax4A	198	89.71		
2bnlA	136	89.92