# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	6.99e-23	a.211.1.1,d.218.1.8	100801,100802
2gz4A	207	0.1308	a.211.1.1	147196
2qgsA	225	0.2495	a.211.1.1	150782
2ogiA	196	0.3762		
3b57A	209	0.3826	a.211.1.1	154835
3kh1A	200	3.147		
1xjjA	644	3.299		
2o08A	188	3.593		
2pq7A	220	3.768	a.211.1.1	149786
3ccgA	190	4.476		
2parA	201	4.597		
3ljxA	288	10.77		
2k9mA	130	12.04		
1khdA	345	12.17	a.46.2.1,c.27.1.1	77400,77401
3khpA	311	12.44		
3memA	457	13.76		
2iyvA	184	15.91	c.37.1.2	137812
1ynbA	173	16.21	a.211.1.1	123718
2bv6A	142	17.51	a.4.5.28	146218
1z91A	147	17.93	a.4.5.28	124736
2z0qA	346	19.52		
3e7qA	215	24.77		
2h12A	436	28.33		
2x0lB	133	32.30		
2kh9A	92	32.63		
1xx7A	184	32.82	a.211.1.1	116143
2ekdA	207	34.54		
3m5fA	244	35.52		
3mzoA	216	36.74		
3kndA	460	40.39		
3ju7A	377	42.00		
3d2wA	89	45.42		
3f3kA	265	47.02		
1lt8A	406	50.50	c.1.26.1	78186
3hsrA	140	54.22		
2pw6A	271	54.93	c.56.6.1	149895
2dfkA	402	59.28	a.87.1.1,b.55.1.1	145077,145078
1p9qC	256	61.41	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
3g7dA	443	63.32		
1sxjC	340	64.71	a.80.1.1,c.37.1.20	106085,106086
1ee5A	424	66.14	a.118.1.1	19132
3do8A	148	66.41		
1f6fA	199	67.10	a.26.1.1	16839
2hydA	578	67.59	c.37.1.12,f.37.1.1	136875,136876
3k2gA	364	69.54		
2ifcA	385	69.89		
1csh	435	70.55		
3hbcA	320	74.91		
3egnA	143	76.49		
2nr7A	195	76.65	d.2.1.9	148359
2paqA	201	78.36	a.211.1.1	139643
1vqrA	297	78.65	a.211.1.3	114015
1p4xA	250	78.88	a.4.5.28,a.4.5.28	87784,87785
3cjnA	162	82.29		
2au3A	407	83.19		
1jgsA	138	83.37	a.4.5.28	66683
1txdA	385	84.97	a.87.1.1,b.55.1.1	107422,107423
2pexA	153	85.11		
2db1A	118	86.06		
1ct9A	553	86.51	c.26.2.1,d.153.1.1	31616,41834
1ee4A	423	87.67	a.118.1.1	19128
2jzbB	74	88.51